Faculty of Biology

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Dr. Dominik Buchner

Fakultät für Biologie / Aquatische Ökosystemforschung

Address
Universitätsstr 2
45117 Essen
Room
S05 V05 F13
Phone
0201 183 6971
E-Mail
dominik.buchner@uni-due.de
Website
https://www.uni-due.de/aquatische_oekosystemforschung/mitarbeiter

Functions

  • Wiss. Mitarbeiterinnen/Mitarbeiter, Aquatische Ökosystemforschung

Current lectures

No current lectures.

Past lectures (max. 10)

No past lectures.

The following publications are listed in the online university bibliography of the University of Duisburg-Essen. Further information may also be found on the person's personal web pages.

    Journal articles

  • Deep, Aman; Sieber, Guido; Boden, Lisa; David, Gwendoline M.; Baikova, Daria; Buchner, Dominik; Starke, Jörn; Stach, Tom L.; Reinders, Torben; Hadžiomerović, Una; Beszteri, Sára; Probst, Alexander J.; Boenigk, Jens; Beisser, Daniela
    A metatranscriptomic exploration of fungal and bacterial contributions to allochthonous leaf litter decomposition in the streambed
    In: PeerJ, Vol. 13, 2025, Nr. 4, e19120
    DOI, Online Full Text (Open Access)
  • Sander, Mandy; Beermann, Arne J.; Buchner, Dominik; Weiss, Martina; Werner, Marie-Thérése; Leese, Florian
    Capture—Incubate—Release : An Animal-Friendly Approach to Assess Local Aquatic Macroinvertebrate Species Diversity Through Environmental DNA Metabarcoding
    In: Environmental DNA, Vol. 7, 2025, Nr. 3, e70112
    DOI (Open Access)
  • Sander, Mandy; Beermann, Arne; Brömmling, Denis; Buchner, Dominik; Weiss, Martina; Leese, Florian
    Comparison of three strategies for local bioassessments in streams using environmental DNA and RNA metabarcoding of macroinvertebrates
    In: Metabarcoding and Metagenomics (MBMG), Vol. 9, 2025, pp. 337 – 366
    DOI, Online Full Text (Open Access)
  • Stach, Tom L.; Deep, Aman; Madge Pimentel, Iris; Buchner, Dominik; Borton, Mikayla A.; Soares, André; Starke, Jörn; Bornemann, Till; Rehsen, Philipp M.; Dreger, Ken; Boenigk, Jens; Vos, Matthijs; Leese, Florian; Beisser, Daniela; Probst, Alexander J.
    Complex compositional and metabolic response of river sediment microbiomes to multiple anthropogenic stressors
    In: ISME Communications: New Developments in Microbial Ecology, 2025, in press
    DOI (Open Access)
  • Sinclair, James S.; Buchner, Dominik; Gessner, Mark O.; Müller, Jörg; Pauls, Steffen U.; Stoll, Stefan; Welti, Ellen A. R.; Bässler, Claus; Buse, Jörn; Dziock, Frank; Enss, Julian; Hörren, Thomas; Künast, Robert; Li, Yuanheng; Marten, Andreas; Morkel, Carsten; Richter, Ronny; Seibold, Sebastian; Sorg, Martin; Twietmeyer, Sönke; Weis, Dirk; Weisser, Wolfgang; Wiggering, Benedikt; Wilmking, Martin; Zotz, Gerhard; Frenzel, Mark; Leese, Florian; Haase, Peter
    Effects of land cover and protected areas on flying insect diversity
    In: Conservation Biology, Vol. 39, 2025, Nr. 4, e14425
    DOI (Open Access)
  • Schneider, Andrea R.; Buchner, Dominik; Bayer, Rike; Kaijser, Willem; Karnatz, Svenja; Hering, Daniel
    Enhancing biodiversity through sowing and reduced management of grasslands on dikes and floodplains
    In: Basic and Applied Ecology, Vol. 87, 2025, pp. 100 – 109
    DOI (Open Access)
  • Buchner, Dominik; Leese, Florian
    Mit Hochdurchsatzsequenzierung das Biodiversitätsmonitoring ausbauen
    In: Biospektrum, Vol. 31, 2025, Nr. 1, pp. 66 – 69
    DOI (Open Access)
  • Jones, J. Iwan; Arnold, Amanda; Buchner, Dominik; Murphy, John F.; Childress, Jasmine N.; Beja, Pedro; Altermatt, Florian; Meissner, Kristian; Adams, Ian; Anderson, Meri; Borrell, Yaisel J.; Briscoe, Andrew G.; Bruce, Kat; Chaves, Cátia; Conyers, Chris; Deiner, Kristy; Elbrecht, Vasco; Fueyo, Álvaro; Goodall, Tim; Granero‐Castro, Javier; Hartmann‐Fatu, Cristina; Jones, Eleanor; Mächler, Elvira; Martins, Filipa M. S.; McGreig, Sam; Pereira‐da‐Conceicoa, Lyndall; Pretty, James L.; Read, Daniel S.; Price, Ben; Leese, Florian; Blackman, Rosetta C.
    Sources of uncertainty in DNA metabarcoding of whole communities : Implications for its use in biomonitoring
    In: Methods in Ecology and Evolution, Vol. 16, 2025, Nr. 8, pp. 1658 – 1673
    DOI (Open Access)
  • Boden, Lisa; Bludau, Dana; Sieber, Guido; Deep, Aman; Baikova, Daria; David, Gwendoline M.; Hadžiomerović, Una; Stach, Tom L.; Buchner, Dominik; Boenigk, Jens
    Varying Responses to Heat Stress and Salinization Between Benthic and Pelagic Riverine Microbial Communities
    In: Environmental Microbiology, Vol. 27, 2025, Nr. 9, e70173
    DOI (Open Access)
  • Hakimzadeh, Ali; Abdala Asbun, Alejandro; Albanese, Davide; Bernard, Maria; Buchner, Dominik; Callahan, Benjamin; Caporaso, J. Gregory; Curd, Emily; Djemiel, Christophe; Brandström Durling, Mikael; Elbrecht, Vasco; Gold, Zachary; Gweon, Hyun S.; Hajibabaei, Mehrdad; Hildebrand, Falk; Mikryukov, Vladimir; Normandeau, Eric; Özkurt, Ezgi; Palmer, Jonathan M.; Pascal, Géraldine; Porter, Teresita M.; Straub, Daniel; Vasar, Martti; Větrovský, Tomáš; Zafeiropoulos, Haris; Anslan, Sten
    A pile of pipelines : An overview of the bioinformatics software for metabarcoding data analyses
    In: Molecular Ecology Resources, Vol. 24, 2024, Nr. 5, e13847
    DOI, Online Full Text (Open Access)
  • Madge Pimentel, Iris; Baikova, Daria; Buchner, Dominik; Burfeid Castellanos, Andrea; David, Gwendoline M.; Deep, Aman; Doliwa, Annemie; Hadžiomerović, Una; Mayombo, Ntambwe Albert Serge; Prati, Sebastian; Spyra, Marzena; Vermiert, Anna-Maria; Beisser, Daniela; Dunthorn, Micah; Piggott, Jeremy J.; Sures, Bernd; Tiegs, Scott D.; Leese, Florian; Beermann, Arne
    Assessing the response of an urban stream ecosystem to salinization under different flow regimes
    In: Science of the Total Environment, Vol. 926, 2024, 171849
    DOI (Open Access)
  • Mayombo, Ntambwe Albert Serge; Dani, Mimoza; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Burfeid-Castellanos, Andrea M.; Beszteri, Bank
    Assessment of microphytobenthos communities in the Kinzig catchment using photosynthesis-related traits, digital light microscopy and 18S-V9 amplicon sequencing
    In: Frontiers in Ecology and Evolution, Vol. 12, 2024, 1422925
    DOI, Online Full Text (Open Access)
  • Remmel, Nicole; Buchner, Dominik; Enss, Julian; Hartung, Viktor; Leese, Florian; Welti, Ellen A. R.; Sinclair, James S.; Haase, Peter
    DNA metabarcoding and morphological identification reveal similar richness, taxonomic composition and body size patterns among flying insect communities
    In: Insect Conservation and Diversity, Vol. 17, 2024, Nr. 3, pp. 449 – 463
    DOI (Open Access)
  • Sander, Mandy; Beermann, Arne; Buchner, Dominik; Madge Pimentel, Iris; Sinclair, James S.; Weiss, Martina; Haase, Peter; Leese, Florian
    Environmental DNA time series analysis of a temperate stream reveals distinct seasonal community and functional shifts
    In: River Research and Applications, Vol. 40, 2024, Nr. 5, pp. 850 – 862
    DOI (Open Access)
  • Mack, Leoni; Buchner, Dominik; Brasseur, Marie V.; Kaijser, Willem; Leese, Florian; Piggott, Jeremy J.; Tiegs, Scott D.; Hering, Daniel
    Fine sediment and the insecticide chlorantraniliprole inhibit organic-matter decomposition in streams through different pathways
    In: Freshwater Biology, Vol. 69, 2024, Nr. 3, pp. 365 – 375
    DOI (Open Access)
  • Mayombo, Ntambwe Albert Serge; Burfeid-Castellanos, Andrea M.; Vermiert, Anna-Maria; Madge Pimentel, Iris; Rehsen, Philipp M.; Dani, Mimoza; Jasinski, Christina; Spyra, Marzena Agata; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Beszteri, Bank
    Functional and compositional responses of stream microphytobenthic communities to multiple stressors increase and release in a mesocosm experiment
    In: Science of the Total Environment, Vol. 943, 2024, 173670
    DOI (Open Access)
  • Wolany, Lisa; Enss, Julian; Leese, Florian; Buchner, Dominik
    Homogenization of insect bulk samples yields more comprehensive yet comparable biodiversity data than non-destructive lysis
    In: Metabarcoding and Metagenomics (MBMG), Vol. 8, 2024, e129814
    DOI, Online Full Text (Open Access)
  • Buchner, Dominik; Sinclair, James S.; Ayasse, Manfred; Beermann, Arne J.; Buse, Jörn; Dziock, Frank; Enss, Julian; Frenzel, Mark; Hörren, Thomas; Li, Yuanheng; Monaghan, Michael T.; Morkel, Carsten; Müller, Jörg; Pauls, Steffen U.; Richter, Ronny; Scharnweber, Tobias; Sorg, Martin; Stoll, Stefan; Twietmeyer, Sönke; Weisser, Wolfgang W.; Wiggering, Benedikt; Wilmking, Martin; Zotz, Gerhard; Gessner, Mark O.; Haase, Peter; Leese, Florian
    Upscaling biodiversity monitoring: Metabarcoding estimates 31,846 insect species from Malaise traps across Germany
    In: Molecular Ecology Resources, Vol. 25, 2024, Nr. 1, e14023
    DOI (Open Access)
  • Brasseur, Marie V.; Buchner, Dominik; Mack, Leoni; Schreiner, Verena C.; Schäfer, Ralf B.; Leese, Florian; Mayer, Christoph
    Multiple stressor effects of insecticide exposure and increased fine sediment deposition on the gene expression profiles of two freshwater invertebrate species
    In: Environmental Sciences Europe (ESEU), Vol. 35, 2023, Nr. 1, 81
    DOI (Open Access)
  • Hempel, Christopher A.; Buchner, Dominik; Mack, Leoni; Brasseur, Marie V.; Tulpan, Dan; Leese, Florian; Steinke, Dirk
    Predicting environmental stressor levels with machine learning: a comparison between amplicon sequencing, metagenomics, and total RNA sequencing based on taxonomically assigned data
    In: Frontiers in Microbiology, Vol. 14, 2023, 1217750
    DOI (Open Access)
  • Vos, Matthijs; Hering, Daniel; Gessner, Mark O.; Leese, Florian; Schäfer, Ralf B.; Tollrian, Ralph; Boenigk, Jens; Haase, Peter; Meckenstock, Rainer; Baikova, Daria; Bayat, Helena; Beermann, Arne; Beißer, Daniela; Beszteri, Bánk; Birk, Sebastian; Boden, Lisa; Brauer, Verena; Brauns, Mario; Buchner, Dominik; Burfeid-Castellanos, Andrea; David, Gwendoline; Deep, Aman; Doliwa, Annemie; Dunthorn, Micah; Enß, Julian; Escobar-Sierra, Camilo; Feld, Christian K.; Fohrer, Nicola; Grabner, Daniel; Hadziomerovic, Una; Jähnig, Sonja C.; Jochmann, Maik; Khaliq, Shaista; Kiesel, Jens; Kuppels, Annabel; Lampert, Kathrin P.; Le, T.T. Yen; Lorenz, Armin W.; Madariaga, Graciela Medina; Meyer, Benjamin; Pantel, Jelena H.; Madge Pimentel, Iris; Mayombo, Ntambwe Serge; Nguyen, Hong Hanh; Peters, Kristin; Pfeifer, Svenja M.; Prati, Sebastian; Probst, Alexander J.; Reiner, Dominik; Rolauffs, Peter; Schlenker, Alexandra; Schmidt, Torsten C.; Shah, Mana; Sieber, Guido; Stach, Tom Lennard; Tielke, Ann-Kathrin; Vermiert, Anna-Maria; Weiss, Martina; Weitere, Markus; Sures, Bernd
    The Asymmetric Response Concept explains ecological consequences of multiple stressor exposure and release
    In: Science of the Total Environment, Vol. 872, 2023, 162196
    DOI
  • Buchner, Dominik; Macher, Till-Hendrik; Leese, Florian
    APSCALE : Advanced pipeline for simple yet comprehensive analyses of DNA Meta-barcoding data
    In: Bioinformatics, Vol. 38, 2022, Nr. 20, pp. 4817 – 4819
    DOI (Open Access)
  • Buchner, Dominik; Beermann, Arne J.; Leese, Florian; Weiss, Martina
    Cooking small and large portions of “biodiversity-soup” : Miniaturized DNA metabarcoding PCRs perform as good as large-volume PCRs
    In: Ecology and Evolution, Vol. 11, 2021, Nr. 13, pp. 9092 – 9099
    DOI, Online Full Text (Open Access)
  • Leese, Florian; Sander, Mandy; Buchner, Dominik; Elbrecht, Vasco; Haase, Peter; Zizka, Vera
    Improved freshwater macroinvertebrate detection from environmental DNA through minimized nontarget amplification
    In: Environmental DNA, Vol. 3, 2021, Nr. 1, pp. 261 – 276
    DOI, Online Full Text (Open Access)
  • Buchner, Dominik; Macher, Till-Hendrik; Beermann, Arne; Werner, Marie-Thérése; Leese, Florian
    Standardized high-throughput biomonitoring using DNA metabarcoding: Strategies for the adoption of automated liquid handlers
    In: Environmental Science and Ecotechnology (ESE), Vol. 8, 2021, 100122
    DOI (Open Access)
  • Buchner, Dominik; Haase, Peter; Leese, Florian
    Wet grinding of invertebrate bulk samples : A scalable and cost-efficient protocol for metabarcoding and metagenomics
    In: Metabarcoding and Metagenomics (MBMG), Vol. 5, 2021, pp. 73 – 81
    DOI (Open Access)

    • Preprints

  • Stach, Tom Lennard; Deep, Aman; Madge Pimentel, Iris; Buchner, Dominik; Borton, Mikayla; Soares, André; Starke, Joern; Bornemann, Till; Rehsen, Philipp M.; Boenigk, Jens; Vos, Matthijs; Leese, Florian; Beisser, Daniela; Probst, Alexander J.
    Complex compositional and cellular response of river sediment microbiomes to multiple anthropogenic stressors
    2024
    DOI (Open Access)
  • Buchner, Dominik; Beermann, Arne; Hörren, Thomas; Enss, Julian; Frenzel, Mark; Li, Yuanheng; Müller, Jörg; Pauls, Steffen U.; Sorg, Martin; Haase, Peter; Leese, Florian
    German-wide Malaise trap metabarcoding estimates over 33,000 insect species
    2023
    DOI (Open Access)

    • Thesis

  • Buchner, Dominik
    Upscaling and automating DNA metabarcoding for high-throughput biodviersity assessments
    Duisburg, Essen, 2023
    DOI, Online Full Text (Open Access)