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Prof. Dr. Dr. Jan Egger

Funktionen

  • Hochschuldozent/in, Medizin

  • Hochschuldozent/in, Informatik

Aktuelle Veranstaltungen

Vergangene Veranstaltungen (max. 10)

Die folgenden Publikationen sind in der Online-Universitätsbibliographie der Universität Duisburg-Essen verzeichnet. Weitere Informationen finden Sie gegebenenfalls auch auf den persönlichen Webseiten der Person.

    Artikel in Zeitschriften

  • Jin, Yuan; Pepe, Antonio; Li, Jianning; Gsaxner, Christina; Chen, Yuxuan; Puladi, Behrus; Zhao, Fen-Hua; Pomykala, Kelsey; Kleesiek, Jens; Frangi, Alejandro F.; Egger, Jan
    Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment : Status Quo
    In: ACM Computing Surveys, Jg. 57, 2025, Nr. 9
    DOI
  • Tangsrivimol, Jonathan A.; Darzidehkalani, Erfan; Virk, Hafeez Ul Hassan; Wang, Zhen; Egger, Jan; Wang, Michelle; Hacking, Sean; Glicksberg, Benjamin S.; Strauss, Markus; Krittanawong, Chayakrit
    Benefits, limits, and risks of ChatGPT in medicine
    In: Frontiers in Artificial Intelligence, Jg. 8, 2025, 1518049
    DOI (Open Access)
  • Keyl, Julius; Keyl, Philipp; Montavon, Grégoire; Hosch, René; Brehmer, Alexander; Mochmann, Liliana; Jurmeister, Philipp; Dernbach, Gabriel; Kim, Moon; Koitka, Sven; Bauer, Sebastian; Bechrakis, Nikolaos; Forsting, Michael; Führer-Sakel, Dagmar; Glas, Martin; Grünwald, Viktor; Hadaschik, Boris; Haubold, Johannes; Herrmann, Ken; Kasper, Stefan; Kimmig, Rainer; Lang, Stephan; Rassaf, Tienush; Roesch, Alexander; Schadendorf, Dirk; Siveke, Jens T.; Stuschke, Martin; Sure, Ulrich; Totzeck, Matthias; Welt, Anja; Wiesweg, Marcel; Baba, Hideo A.; Nensa, Felix; Egger, Jan; Müller, Klaus-Robert; Schuler, Martin; Klauschen, Frederick; Kleesiek, Jens
    Decoding pan-cancer treatment outcomes using multimodal real-world data and explainable artificial intelligence
    In: Nature Cancer, Jg. 6, 2025, Nr. 2, S. 307 – 322
    DOI (Open Access)
  • Pepe, Antonio; Schussnig, Richard; Li, Jianning; Gsaxner, Christina; Schmalstieg, Dieter; Egger, Jan
    Deep Medial Voxels : Learned Medial Axis Approximations for Anatomical Shape Modeling
    In: IEEE Transactions on Medical Imaging (T-MI), 2025, in press
    DOI
  • Memon, Afaque Rafique; Shi, Haochen; Memon, Tarique Rafique; Egger, Jan; Chen, Xiaojun
    Deep learning-based automatic cranial implant design through direct defect shape prediction and its comparison study
    In: Medical and Biological Engineering and Computing, Jg. 63, 2025, Nr. 9, S. 2815 – 2826
    DOI
  • Becker, Paulina; Li, Yao; Drobinsky, Sergey; Egger, Jan; Xie, Kunpeng; Rashad, Ashkan; Radermacher, Klaus; Röhrig, Rainer; de la Fuente, Matías; Hölzle, Frank; Puladi, Behrus
    Development and validation of collaborative robot-assisted cutting method for iliac crest flap raising : Randomized crossover trial
    In: Scientific Reports, Jg. 15, 2025, Nr. 1, 16909
    DOI (Open Access)
  • Mekki, Yosra Magdi; Luijten, Gijs; Hagert, Elisabet; Belkhair, Sirajeddin; Varghese, Chris; Qadir, Junaid; Solaiman, Barry; Bilal, Muhammad; Dhanda, Jaghtar; Egger, Jan; Deng, Jun; Khanduja, Vikas; Frangi, Alejandro F.; Zughaier, Susu M.; Stotland, Mitchell A.
    Digital twins for the era of personalized surgery
    In: npj Digital Medicine, Jg. 8, 2025, Nr. 1, 283
    DOI (Open Access)
  • Brehmer, Alexander; Seibold, Constantin; Egger, Jan; Majjouti, Khalid; Tapp-Herrenbrück, Michaela; Pinnekamp, Hannah; Priester, Vanessa; Aleithe, Michael; Fischer, Uli; Hosters, Bernadette; Kleesiek, Jens
    Fine-Grained Classification of Pressure Ulcers and Incontinence-Associated Dermatitis Using Multimodal Deep Learning : Algorithm Development and Validation Study
    In: JMIR AI, Jg. 4, 2025, e67356
    DOI (Open Access)
  • Moors, Jasper J. E.; Xu, Zhibin; Xie, Kunpeng; Rashad, Ashkan; Vladu, Oliver; Egger, Jan; Röhrig, Rainer; Hölzle, Frank; Puladi, Behrus
    Full-thickness skin graft versus split-thickness skin graft for fasciocutaneous radial forearm free flap donor site closure : A systematic review and meta-analysis
    In: Systematic Reviews, Jg. 14, 2025, Nr. 1, 118
    DOI (Open Access)
  • Solak, Naida; Ferreira, André; Luijten, Gijs; Puladi, Behrus; Alves, Victor; Egger, Jan
    GBM-Reservoir: Brain tumor (Glioblastoma Multiforme) MRI dataset collection with ground truth segmentation masks
    In: Data in Brief, Jg. 58, 2025, 111287
    DOI (Open Access)
  • Puladi, B.; Gsaxner, C.; Kleesiek, Jens; Hölzle, F.; Röhrig, R.; Egger, Jan
    In Reply
    In: International Journal of Oral and Maxillofacial Surgery, Jg. 54, 2025, Nr. 1, S. 94 – 95
    DOI
  • Li, Jianning; Zhou, Zongwei; Yang, Jiancheng; Pepe, Antonio; Gsaxner, Christina; Luijten, Gijs; Qu, Chongyu; Zhang, Tiezheng; Chen, Xiaoxi; Li, Wenxuan; Wodzinski, Marek; Friedrich, Paul; Xie, Kangxian; Jin, Yuan; Ambigapathy, Narmada; Nasca, Enrico; Solak, Naida; Melito, Gian Marco; Vu, Viet Duc; Memon, Afaque R.; Schlachta, Christopher; De Ribaupierre, Sandrine; Patel, Rajnikant; Eagleson, Roy; Chen, Xiaojun; Mächler, Heinrich; Kirschke, Jan Stefan; De La Rosa, Ezequiel; Christ, Patrick Ferdinand; Li, Hongwei Bran; Ellis, David G.; Aizenberg, Michele R.; Gatidis, Sergios; Küstner, Thomas; Shusharina, Nadya; Heller, Nicholas; Andrearczyk, Vincent; Depeursinge, Adrien; Hatt, Mathieu; Sekuboyina, Anjany; Löffler, Maximilian T.; Liebl, Hans; Dorent, Reuben; Vercauteren, Tom; Shapey, Jonathan; Kujawa, Aaron; Cornelissen, Stefan; Langenhuizen, Patrick; Ben-Hamadou, Achraf; Rekik, Ahmed; Pujades, Sergi; Boyer, Edmond; Bolelli, Federico; Grana, Costantino; Lumetti, Luca; Salehi, Hamidreza; Ma, Jun; Zhang, Yao; Gharleghi, Ramtin; Beier, Susann; Sowmya, Arcot; Garza-Villarreal, Eduardo A.; Balducci, Thania; Angeles-Valdez, Diego; Souza, Roberto; Rittner, Leticia; Frayne, Richard; Ji, Yuanfeng; Ferrari, Vincenzo; Chatterjee, Soumick; Dubost, Florian; Schreiber, Stefanie; Mattern, Hendrik; Speck, Oliver; Haehn, Daniel; John, Christoph; Nürnberger, Andreas; Pedrosa, João; Ferreira, Carlos; Aresta, Guilherme; Cunha, António; Campilho, Aurélio; Suter, Yannick; Garcia, Jose; Lalande, Alain; Vandenbossche, Vicky; Van Oevelen, Aline; Duquesne, Kate; Mekhzoum, Hamza; Vandemeulebroucke, Jef; Audenaert, Emmanuel; Krebs, Claudia; Van Leeuwen, Timo; Vereecke, Evie; Heidemeyer, Hauke; Röhrig, Rainer; Hölzle, Frank; Badeli, Vahid; Krieger, Kathrin; Gunzer, Matthias; Chen, Jianxu; Van Meegdenburg, Timo; Dada, Amin; Balzer, Miriam; Fragemann, Jana; Jonske, Frederic; Rempe, Moritz; Malorodov, Stanislav; Bahnsen, Fin H.; Seibold, Constantin; Jaus, Alexander; Marinov, Zdravko; Jaeger, Paul F.; Stiefelhagen, Rainer; Santos, Ana Sofia; Lindo, Mariana; Ferreira, André; Alves, Victor; Kamp, Michael; Abourayya, Amr; Nensa, Felix; Hörst, Fabian; Brehmer, Alexander; Heine, Lukas; Hanusrichter, Yannik; Weßling, Martin; Dudda, Marcel; Podleska, Lars E.; Fink, Matthias A.; Keyl, Julius; Tserpes, Konstantinos; Kim, Moon-Sung; Elhabian, Shireen; Lamecker, Hans; Zukić, Dženan; Paniagua, Beatriz; Wachinger, Christian; Urschler, Martin; Duong, Luc; Wasserthal, Jakob; Hoyer, Peter F.; Basu, Oliver; Maal, Thomas; Witjes, Max J. H.; Schiele, Gregor; Chang, Ti-Chiun; Ahmadi, Seyed-Ahmad; Luo, Ping; Menze, Bjoern; Reyes, Mauricio; Deserno, Thomas M.; Davatzikos, Christos; Puladi, Behrus; Fua, Pascal; Yuille, Alan L.; Kleesiek, Jens; Egger, Jan
    MedShapeNet : a large-scale dataset of 3D medical shapes for computer vision
    In: Biomedical engineering = Biomedizinische Technik, Jg. 70, 2025, Nr. 1, S. 71 – 90
    DOI, Online Volltext (Open Access)
  • Krieger, Kathrin; Egger, Jan; Kleesiek, Jens; Gunzer, Matthias; Chen, Jianxu
    Multisensory Extended Reality Applications Offer Benefits for Volumetric Biomedical Image Analysis in Research and Medicine
    In: Journal of Imaging Informatics in Medicine, Jg. 38, 2025, Nr. 1, S. 646 – 655
    DOI (Open Access)
  • Sadok, Nadia; Luijten, Gijs; Bahnsen, Fin H.; Gsaxner, Christina; Peters, Lorenz; Eichler, Theda; Rombach, Theresa; Lang, Stephan; Khattab, Sameh; Kleesiek, Jens; Holle-Lee, Dagny; Meyer, Moritz; Egger, Jan
    Performing the HINTS-exam using a mixed-reality head-mounted display in patients with acute vestibular syndrome : A feasibility study
    In: Frontiers in Neurology, Jg. 16, 2025, 1576959
    DOI, Online Volltext (Open Access)
  • Barajas Ordonez, Felix; Xie, Kunpeng; Ferreira, André; Siepmann, Robert; Chargi, Najiba; Nebelung, Sven; Truhn, Daniel; Bergé, Stefaan; Bruners, Philipp; Egger, Jan; Hölzle, Frank; Wirth, Markus; Kuhl, Christiane; Hinrichs-Puladi, Behrus
    Skeletal Muscle Radiation Attenuation at C3 Predicts Survival in Head and Neck Cancer
    In: Current Oncology, Jg. 32, 2025, Nr. 10, 587
    DOI (Open Access)
  • Kasper, Stefan; Liszio, S.; Schorrmann, Katrin; Gerigk, Monja; Jovic, Slobodan; Basu, Oliver; Kostbade, Karina; Goraus, Beate; Elsakka, Abdelrahman; Puladi, B.; Kleesiek, Jens; Schuler, Martin; Luijten, G.; Egger, Jan
    Virtual reality support during systemic cancer therapy to improve anxiety/depressive symptoms and reduce toxicity in patients with gastrointestinal cancers—OncoVR
    In: ESMO Gastrointestinal Oncology, Jg. 7, 2025, 100135
    DOI (Open Access)
  • Jonske, Frederic; Kim, Moon; Nasca, Enrico; Evers, Janis; Haubold, Johannes; Hosch, René; Nensa, Felix; Kamp, Michael; Seibold, Constantin; Egger, Jan; Kleesiek, Jens
    Why does my medical AI look at pictures of birds? : Exploring the efficacy of transfer learning across domain boundaries
    In: Computer Methods and Programs in Biomedicine, Jg. 261, 2025, 108634
    DOI (Open Access)
  • Bošnjak, Domagoj; Pepe, Antonio; Schussnig, Richard; Egger, Jan; Fries, Thomas-Peter
    A semi-automatic method for block-structured hexahedral meshing of aortic dissections
    In: International Journal for Numerical Methods in Biomedical Engineering, Jg. 40, 2024, Nr. 11, e3860
    DOI (Open Access)
  • Hoffmann, Hanna; Funke, Isabel; Peters, Philipp; Venkatesh, Danush Kumar; Egger, Jan; Rivoir, Dominik; Röhrig, Rainer; Hölzle, Frank; Bodenstedt, Sebastian; Willemer, Marie-Christin; Speidel, Stefanie; Puladi, Behrus
    AIxSuture : vision-based assessment of open suturing skills
    In: International Journal of Computer Assisted Radiology and Surgery, Jg. 19, 2024, Nr. 6, S. 1045 – 1052
    DOI (Open Access)
  • Gruber, Lennart Johannes; Egger, Jan; Bönsch, Andrea; Kraeima, Joep; Ulbrich, Max; van den Bosch, Vincent; Motmaen, Ila; Wilpert, Caroline; Ooms, Mark; Isfort, Peter; Hölzle, Frank; Puladi, Behrus
    Accuracy and Precision of Mandible Segmentation and Its Clinical Implications : Virtual Reality, Desktop Screen and Artificial Intelligence
    In: Expert Systems with Applications, Jg. 239, 2024, 122275
    DOI (Open Access)
  • Li, Yao; Drobinsky, Sergey; Becker, Paulina; Xie, Kunpeng; Lipprandt, Myriam; Mueller, Christian Andreas; Egger, Jan; Hölzle, Frank; Röhrig, Rainer; Radermacher, Klaus; de la Fuente, Matías; Puladi, Behrus
    Accuracy and efficiency of drilling trajectories with augmented reality versus conventional navigation randomized crossover trial
    In: npj Digital Medicine, Jg. 7, 2024, Nr. 1, 316
    DOI (Open Access)
  • Li, Jianning; Ellis, David G.; Pepe, Antonio; Gsaxner, Christina; Aizenberg, Michele R.; Kleesiek, Jens; Egger, Jan
    Back to the Roots : Reconstructing Large and Complex Cranial Defects using an Image-based Statistical Shape Model
    In: Journal of Medical Systems, Jg. 48, 2024, Nr. 1, 55
    DOI (Open Access)
  • Hörst, Fabian; Rempe, Moritz; Heine, Lukas; Seibold, Constantin; Keyl, Julius; Baldini, Giulia; Ugurel, Selma; Siveke, Jens; Grünwald, Barbara; Egger, Jan; Kleesiek, Jens
    CellViT : Vision Transformers for precise cell segmentation and classification
    In: Medical Image Analysis, Jg. 94, 2024, 103143
    DOI (Open Access)
  • Li, Jianning; Dada, Amin; Puladi, Behrus; Kleesiek, Jens; Egger, Jan
    ChatGPT in healthcare : A taxonomy and systematic review
    In: Computer Methods and Programs in Biomedicine, Jg. 245, 2024, 108013
    DOI (Open Access)
  • Ferreira, André; Li, Jianning; Pomykala, Kelsey L.; Kleesiek, Jens; Alves, Victor; Egger, Jan
    Corrigendum to : GAN-based generation of realistic 3D volumetric data: A systematic review and taxonomy
    In: Medical Image Analysis, Jg. 96, 2024, 103174
    DOI (Open Access)
  • Raufeisen, Johannes; Xie, Kunpeng; Hörst, Fabian; Braunschweig, Till; Li, Jianning; Kleesiek, Jens; Röhrig, Rainer; Egger, Jan; Leibe, Bastian; Hölzle, Frank; Hermans, Alexander; Puladi, Behrus
    Cyto R-CNN and CytoNuke Dataset : Towards reliable whole-cell segmentation in bright-field histological images
    In: Computer Methods and Programs in Biomedicine, Jg. 252, 2024, 108215
    DOI (Open Access)
  • Marinov, Zdravko; Jäger, Paul F.; Egger, Jan; Kleesiek, Jens; Stiefelhagen, Rainer
    Deep Interactive Segmentation of Medical Images : A Systematic Review and Taxonomy
    In: IEEE Transactions on Pattern Analysis and Machine Intelligence (T-PAMI), Jg. 46, 2024, Nr. 12, S. 10998 – 11018
    DOI (Open Access)
  • Melchior, Claire; Isfort, Peter; Braunschweig, Till; Witjes, Max; Van den Bosch, Vincent; Rashad, Ashkan; Egger, Jan; de la Fuente, Matías; Röhrig, Rainer; Hölzle, Frank; Puladi, Behrus
    Development and validation of a cadaveric porcine Pseudotumor model for Oral Cancer biopsy and resection training
    In: BMC Medical Education, Jg. 24, 2024, Nr. 1, 250
    DOI (Open Access)
  • Brehmer, Alexander; Sauer, Christopher Martin; Salazar Rodríguez, Jayson; Herrmann, Kelsey; Kim, Moon; Keyl, Julius; Bahnsen, Fin Hendrik; Frank, Benedikt; Köhrmann, Martin; Rassaf, Tienush; Mahabadi, Amir Abbas; Hadaschik, Boris; Darr, Christopher; Herrmann, Ken; Tan, Susanne; Buer, Jan; Brenner, Thorsten; Reinhardt, Hans Christian; Nensa, Felix; Gertz, Michael; Egger, Jan; Kleesiek, Jens
    Establishing Medical Intelligence - Leveraging Fast Healthcare Interoperability Resources to Improve Clinical Management : Retrospective Cohort and Clinical Implementation Study
    In: Journal of Medical Internet Research (JMIR), Jg. 26, 2024, e55148
    DOI, Online Volltext (Open Access)
  • Moors, Jasper J.E.; Xu, Zhibin; Xie, Kunpeng; Rashad, Ashkan; Egger, Jan; Röhrig, Rainer; Hölzle, Frank; Puladi, Behrus
    Full-thickness skin graft versus split-thickness skin graft for radial forearm free flap donor site closure : Protocol for a systematic review and meta-analysis
    In: Systematic Reviews, Jg. 13, 2024, Nr. 1, 74
    DOI (Open Access)
  • Ferreira, André; Li, Jianning; Pomykala, Kelsey L.; Kleesiek, Jens; Alves, Victor; Egger, Jan
    GAN-based generation of realistic 3D volumetric data : A systematic review and taxonomy
    In: Medical Image Analysis, Jg. 93, 2024, 103100
    DOI (Open Access)
  • Dada, Amin; Ufer, Tim Leon; Kim, Moon; Hasin, Max; Spieker, Nicola; Forsting, Michael; Nensa, Felix; Egger, Jan; Kleesiek, Jens
    Information extraction from weakly structured radiological reports with natural language queries
    In: European Radiology, Jg. 34, 2024, Nr. 1, S. 330 – 337
    DOI (Open Access)
  • Motmaen, Ila; Xie, Kunpeng; Schönbrunn, Leon; Berens, Jeff; Grunert, Kim; Plum, Anna Maria; Raufeisen, Johannes; Ferreira, André; Hermans, Alexander; Egger, Jan; Hölzle, Frank; Truhn, Daniel; Puladi, Behrus
    Insights into Predicting Tooth Extraction from Panoramic Dental Images: Artificial Intelligence vs. Dentists
    In: Clinical Oral Investigations, Jg. 28, 2024, Nr. 7, 381
    DOI (Open Access)
  • Egger, Jan; Gsaxner, Christina; Luijten, Gijs; Chen, Jianxu; Chen, Xiaojun; Bian, Jiang; Kleesiek, Jens; Puladi, Behrus
    Is the Apple Vision Pro the Ultimate Display? : A First Perspective and Survey on Entering the Wonderland of Precision Medicine
    In: JMIR Serious Games (JSG), Jg. 12, 2024, e52785
    DOI (Open Access)
  • Gatidis, Sergios; Früh, Marcel; Fabritius, Matthias P.; Gu, Sijing; Nikolaou, Konstantin; Fougère, Christian La; Ye, Jin; He, Junjun; Peng, Yige; Bi, Lei; Ma, Jun; Wang, Bo; Zhang, Jia; Huang, Yukun; Heiliger, Lars; Marinov, Zdravko; Stiefelhagen, Rainer; Egger, Jan; Kleesiek, Jens; Sibille, Ludovic; Xiang, Lei; Bendazzoli, Simone; Astaraki, Mehdi; Ingrisch, Michael; Cyran, Clemens C.; Küstner, Thomas
    Results from the autoPET challenge on fully automated lesion segmentation in oncologic PET/CT imaging
    In: Nature Machine Intelligence, Jg. 6, 2024, Nr. 11, S. 1396 – 1405
    DOI
  • Puladi, Behrus; Gsaxner, Christina; Kleesiek, Jens; Hölzle, Frank W.; Röhrig, Rainer; Egger, Jan
    The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery : a narrative review
    In: International Journal of Oral and Maxillofacial Surgery, Jg. 53, 2024, Nr. 1, S. 78 – 88
    DOI (Open Access)
  • Mayer, Christian; Pepe, Antonio; Hossain, Sophie; Karner, Barbara; Arnreiter, Melanie; Kleesiek, Jens; Schmid, Johannes; Janisch, Michael; Hannes, Deutschmann; Fuchsjäger, Michael; Zimpfer, Daniel; Egger, Jan; Mächler, Heinrich
    Type B Aortic Dissection CTA Collection with True and False Lumen Expert Annotations for the Development of AI-based Algorithms
    In: Scientific Data, Jg. 11, 2024, Nr. 1, 596
    DOI (Open Access)
  • Bucher, Andreas Michael; Egger, Jan; Dietz, Julia; Strecker, Ralph; Hilbert, Tom; Frodl, Eric; Wenzel, Mike; Penzkofer, Tobias; Hamm, Bernd; Chun, Felix KH; Vogl, Thomas; Kleesiek, Jens; Beeres, Martin
    Value of MRI - T2 Mapping to Differentiate Clinically Significant Prostate Cancer
    In: Journal of Imaging Informatics in Medicine, Jg. 37, 2024, Nr. 6, S. 3304 – 3315
    DOI (Open Access)
  • Rempe, Moritz; Mentzel, Florian; Pomykala, Kelsey L.; Haubold, Johannes; Nensa, Felix; Kroeninger, Kevin; Egger, Jan; Kleesiek, Jens
    k-strip : A novel segmentation algorithm in k-space for the application of skull stripping
    In: Computer Methods and Programs in Biomedicine, Jg. 243, 2024, 107912
    DOI (Open Access)
  • Luijten, Gijs; Gsaxner, Christina; Li, Jianning; Pepe, Antonio; Ambigapathy, Narmada; Kim, Moon; Chen, Xiaojun; Kleesiek, Jens; Hölzle, Frank; Puladi, Behrus; Egger, Jan
    3D surgical instrument collection for computer vision and extended reality
    In: Scientific Data, Jg. 10, 2023, Nr. 1, 796
    DOI (Open Access)
  • Kim, Moon; Seifert, Robert; Fragemann, Jana; Kersting, David; Murray, Jacob; Jonske, Frederic; Pomykala, Kelsey L.; Egger, Jan; Fendler, Wolfgang; Herrmann, Ken; Kleesiek, Jens
    Evaluation of thresholding methods for the quantification of [⁶⁸Ga]Ga-PSMA-11 PET molecular tumor volume and their effect on survival prediction in patients with advanced prostate cancer undergoing [¹⁷⁷Lu]Lu-PSMA-617 radioligand therapy
    In: European Journal of Nuclear Medicine and Molecular Imaging, Jg. 50, 2023, Nr. 7, S. 2196 – 2209
    DOI (Open Access)
  • Hörst, Fabian; Ting, Saskia; Liffers, Sven-Thorsten; Pomykala, Kelsey L.; Steiger, Katja; Albertsmeier, Markus; Angele, Martin K.; Lorenzen, Sylvie; Quante, Michael; Weichert, Wilko; Egger, Jan; Siveke, Jens T.; Kleesiek, Jens
    Histology-Based Prediction of Therapy Response to Neoadjuvant Chemotherapy for Esophageal and Esophagogastric Junction Adenocarcinomas Using Deep Learning
    In: JCO Clinical Cancer Informatics (JCO CCI), Jg. 7, 2023, e2300038
    DOI (Open Access)
  • Li, Jianning; Ferreira, André; Puladi, Behrus; Alves, Victor; Kamp, Michael; Kim, Moon; Nensa, Felix; Kleesiek, Jens; Ahmadi, Seyed-Ahmad; Egger, Jan
    Open-source skull reconstruction with MONAI
    In: SoftwareX, Jg. 23, 2023, 101432
    DOI (Open Access)
  • Li, Jianning; Gsaxner, Christina; Pepe, Antonio; Schmalstieg, Dieter; Kleesiek, Jens; Egger, Jan
    Sparse convolutional neural network for high-resolution skull shape completion and shape super-resolution
    In: Scientific Reports, Jg. 13, 2023, Nr. 1, 20229
    DOI, Online Volltext (Open Access)
  • Li, Jianning; Ellis, David G.; Kodym, Oldřich; Rauschenbach, Laurèl; Rieß, Christoph; Sure, Ulrich; Wrede, Karsten; Alvarez, Carlos M.; Wodzinski, Marek; Daniol, Mateusz; Hemmerling, Daria; Mahdi, Hamza; Clement, Allison; Kim, Evan; Fishman, Zachary; Whyne, Cari M.; Mainprize, James G.; Hardisty, Michael R.; Pathak, Shashwat; Sindhura, Chitimireddy; Gorthi, Rama Krishna Sai S.; Kiran, Degala Venkata; Gorthi, Subrahmanyam; Yang, Bokai; Fang, Ke; Li, Xingyu; Kroviakov, Artem; Yu, Lei; Jin, Yuan; Pepe, Antonio; Gsaxner, Christina; Herout, Adam; Alves, Victor; Španěl, Michal; Aizenberg, Michele R.; Kleesiek, Jens; Egger, Jan
    Towards clinical applicability and computational efficiency in automatic cranial implant design : An overview of the AutoImplant 2021 cranial implant design challenge
    In: Medical Image Analysis, Jg. 88, 2023, 102865
    DOI
  • Ester, Oliver; Hörst, Fabian; Seibold, Constantin; Keyl, Julius; Ting, Saskia; Vasileiadis, Nikolaos; Schmitz, Jessica; Ivanyi, Philipp; Grünwald, Viktor; Bräsen, Jan Hinrich; Egger, Jan; Kleesiek, Jens
    Valuing vicinity : Memory attention framework for context-based semantic segmentation in histopathology
    In: Computerized Medical Imaging and Graphics, Jg. 107, 2023, 102238
    DOI (Open Access)
  • Fijačko, Nino; Metličar, Špela; Kleesiek, Jens; Egger, Jan; Chang, Todd P.
    Virtual Reality, Augmented Reality, Augmented Virtuality, or Mixed Reality in cardiopulmonary resuscitation : Which Extended Reality am I using for teaching adult basic life support?
    In: Resuscitation, Jg. 192, 2023, 109973
    DOI
  • Strack, Christian; Pomykala, Kelsey L.; Schlemmer, Heinz-Peter; Egger, Jan; Kleesiek, Jens
    “A net for everyone” : fully personalized and unsupervised neural networks trained with longitudinal data from a single patient
    In: BMC Medical Imaging, Jg. 23, 2023, Nr. 1, 174
    DOI, Online Volltext (Open Access)
  • Xu, Jiangchang; Zeng, Bolun; Egger, Jan; Wang, Chunliang; Smedby, Örjan; Jiang, Xiaoyi; Chen, Xiaojun
    A review on AI-based medical image computing in head and neck surgery
    In: Physics in Medicine and Biology, Jg. 67, 2022, Nr. 17, 17TR01
    DOI
  • Radl, Lukas; Jin, Yuan; Pepe, Antonio; Li, Jianning; Gsaxner, Christina; Zhao, Fen-hua; Egger, Jan
    AVT : Multicenter aortic vessel tree CTA dataset collection with ground truth segmentation masks
    In: Data in Brief, Jg. 40, 2022, 107801
    DOI (Open Access)
  • Gonçalves, Maria; Gsaxner, Christina; Ferreira, André; Li, Jianning; Puladi, Behrus; Kleesiek, Jens; Egger, Jan; Alves, Victor
    Radiomics in Head and Neck Cancer Outcome Predictions
    In: Diagnostics, Jg. 12, 2022, Nr. 11, 2733
    DOI, Online Volltext (Open Access)
  • Egger, Jan; Wild, Daniel; Weber, Maximilian; Bedoya, Christopher A. Ramirez; Karner, Florian; Prutsch, Alexander; Schmied, Michael; Dionysio, Christina; Krobath, Dominik; Jin, Yuan; Gsaxner, Christina; Li, Jianning; Pepe, Antonio
    Studierfenster : an Open Science Cloud-Based Medical Imaging Analysis Platform
    In: Journal of Digital Imaging, Jg. 35, 2022, Nr. 2, S. 340 – 355
    DOI (Open Access)

    • Vorworte / Nachworte

  • Wachinger, Christian; Elhabian, Shireen; Luijten, Gijs; Gopinath, Karthik; Egger, Jan
    Preface
    In: Shape in Medical Imaging: International Workshop, ShapeMI 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings / International Workshop, ShapeMI 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings / Wachinger, Christian; Luijten, Gijs; Elhabian, Shireen; Gopinath, Karthik; Egger, Jan (Hrsg.). Basel: Springer Cham, 2025, S. V – VI
    Online Volltext
  • Fragemann, Jana; Li, Jianning; Liu, Xiao; Tsaftaris, Sotirios A.; Egger, Jan; Kleesiek, Jens
    Preface
    In: Medical Applications with Disentanglements: First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings / Fragemann, Jana; Li, Jianning; Liu, Xiao; Tsaftaris, Sotirios A.; Egger, Jan; Kleesiek, Jens; First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, 22.09.2022, Singapore. Cham; Berlin, Germany; Heidelberg, Germany; Berlin; Heidelberg; New York, NY: Springer Science and Business Media Deutschland GmbH, 2023, S. VI
    DOI
  • Wachinger, Christian; Paniagua, Beatriz; Elhabian, Shireen; Li, Jianning; Egger, Jan
    Preface
    In: Shape in Medical Imaging: Proceedings / Wachinger, Christian; Paniagua, Beatriz; Elhabian, Shireen; Li, Jianning; Egger, Jan; International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, October 8, 2023, Vancouver, BC, Canada. Cham; Berlin; Heidelberg: Springer, 2023
    DOI
  • Li, Jianning; Egger, Jan
    Preface
    In: Towards the Automatization of Cranial Implant Design in Cranioplasty II: Proceedings / Second Challenge, AutoImplant 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, October 1, 2021 / Li, Jianning; Egger, Jan (Hrsg.). Cham: Springer, 2021, S. v
    DOI

    • Abstracts

  • Karner, B.; Arnreiter, M.; Mayer, C.; Hossain, S.; Schmid, J.; Pepe, A.; Fuchsjäger, M.; Zimpfer, D.; Egger, Jan; Mächler, H.
    Three-dimensional Image Segmentation Permits Rapid Morphologic Assessment and Risk Stratification in Type B Aortic Dissection
    Österreichische Kardiologische Gesellschaft Jahrestagung 2023 "Wissenschaft und Praxis im Dialog", 31. Mai bis 3. Juni 2023, Salzburg, Österreich,
    In: Wiener Klinische Wochenschrift. Wien: Springer Science, Jg. 135, 2023, Nr. 2, S. S375 – S376
  • Hossain, S.; Mayer, C.; Schmid, J.; Pepe, A.; Arnreiter, M.; Karner, B.; Fuchsjäger, M.; Zimpfer, D.; Egger, Jan; Mächler, H.
    Type B Aortic Dissections : How to perform CT-Segmentations using the Imaging Tool 3D Slicer
    Österreichische Kardiologische Gesellschaft Jahrestagung 2023 "Wissenschaft und Praxis im Dialog", 31. Mai bis 3. Juni 2023, Salzburg, Österreich,
    In: Wiener Klinische Wochenschrift. Wien: Springer Science, Jg. 135, 2023, Nr. 2, S. S406 – S407

    • Beiträge in Sammelwerken und Tagungsbänden

  • Van Meegdenburg, Timo; Luijten, Gijs; Kleesiek, Jens; Puladi, Behrus; Ferreira, Andre; Egger, Jan; Gsaxner, Christina
    A Baseline Solution for the ISBI 2024 Dreaming Challenge
    In: 2024 IEEE International Symposium on Biomedical Imaging (ISBI) / IEEE International Symposium on Biomedical Imaging (ISBI), 27-30 May 2024, Athens, Greece / IEEE (Hrsg.). Piscataway: IEEE Computer Society, 2024
    DOI
  • Hörst, Fabian; Schaheer, Sajad H.; Baldini, Giulia; Bahnsen, Fin H.; Egger, Jan; Kleesiek, Jens
    Accelerating Artificial Intelligence-based Whole Slide Image Analysis with an Optimized Preprocessing Pipeline
    In: Bildverarbeitung für die Medizin 2024: Proceedings / German Conference on Medical Image Computing; 10-12 March 2024; Erlangen / Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus; Palm, Christoph; Tolxdorff, Thomas (Hrsg.). Berlin: Springer, 2024, S. 356 – 361
    DOI
  • Weber, Maximilian; Wild, Daniel; Kleesiek, Jens; Egger, Jan; Gsaxner, Christina
    Deep Learning-Based Point Cloud Registration for Augmented Reality-Guided Surgery
    In: 2024 IEEE International Symposium on Biomedical Imaging (ISBI) / IEEE International Symposium on Biomedical Imaging (ISBI), 27-30 May 2024, Athens, Greece / IEEE (Hrsg.). Piscataway: IEEE Computer Society, 2024
    DOI, Online Volltext (Open Access)
  • Gsaxner, Christina; Mori, Shohei; Schmalstieg, Dieter; Egger, Jan; Paar, Gerhard; Bailer, Werner; Kalkofen, Denis
    DeepDR : Deep Structure-Aware RGB-D Inpainting for Diminished Reality
    In: 2024 International Conference in 3D Vision: 3DV 2024 ; 18-21 March 2024 Davos, Switzerland ; Proceedings / 2024 International Conference in 3D Vision, 3DV 2024, 18-21 March 2024 Davos, Switzerland. Piscataway: Institute of Electrical and Electronics Engineers, 2024, S. 750 – 760
    DOI, Online Volltext (Open Access)
  • Jonske, Frederic; Osthues, Kevin; Dada, Amin; Nasca, Enrico; Fragemann, Jana; Alff, Julian; Bakumenko, Oleh; Birnbach, Marcel; Kondratenko, Maxim; Reinike, Lars; Schulz, Benjamin; Siethoff, Fabian; Simon, Tobias; Wang, Joey; Zhang, Nils; Bahnsen, Fin H.; Egger, Jan; Kim, Moon-Sung; Lymbery, Maria; Kleesiek, Jens; Kraus, Johannes
    Designing and Implementing an Interactive Cloud Platform for Teaching Machine Learning with Medical Data
    In: Artificial Intelligence for Security: Enhancing Protection in a Changing World / Sipola, Tuomo; Alatalo, Janne; Wolfmayr, Monika; Kokkonen, Tero (Hrsg.). Cham: Springer Nature, 2024, S. 259 – 292
    DOI
  • Ferreira, André; Solak, Naida; Li, Jianning; Dammann, Philipp; Kleesiek, Jens; Alves, Victor; Egger, Jan
    Enhanced Data Augmentation using Synthetic Data for Brain Tumour Segmentation
    In: Brain Tumor Segmentation, and Cross-Modality Domain Adaptation for Medical Image Segmentation: MICCAI Challenges, BraTS 2023 and CrossMoDA 2023, held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 12 and 8, 2024, Proceedings / Brain Tumor Segmentation (BraTS 2023) Challenge, October, 8th–12th, 2024, Vancouver, BC, Canada / Baid, Ujjwal; Dorent, Reuben; Malec, Sylwia; et al. (Hrsg.). Berlin: Springer Science and Business Media Deutschland, 2024, S. 79 – 93
    DOI
  • Ferreira, Andre; Luijten, Gijs; Puladi, Behrus; Kleesiek, Jens; Alves, Victor; Egger, Jan
    Generalisation of Segmentation Using Generative Adversarial Networks
    In: 2024 IEEE International Symposium on Biomedical Imaging (ISBI) / IEEE International Symposium on Biomedical Imaging (ISBI), 27-30 May 2024, Athens, Greece / IEEE (Hrsg.). Piscataway: IEEE Computer Society, 2024
    DOI
  • Perz, Markus; Luijten, Gijs; Kleesiek, Jens; Schmalstieg, Dieter; Egger, Jan; Gsaxner, Christina
    MultiAR : A Multi-User Augmented Reality Platform for Biomedical Education
    In: Proceedings of the 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2024) / 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2024): 15-19 July 2024; Orlando, USA. Piscataway: Institute of Electrical and Electronics Engineers (IEEE), 2024
    DOI, Online Volltext
  • Melito, Gian Marco; Pepe, Antonio; Jafarinia, Alireza; Krispel, Thomas; Egger, Jan
    Optimizing Aortic Segmentation with an Innovative Quality Assessment : The Role of Global Sensitivity Analysis
    In: Segmentation of the Aorta. Towards the Automatic Segmentation, Modeling, and Meshing of the Aortic Vessel Tree from Multicenter Acquisition: First Challenge, SEG.A. 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings / SEG.A. 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023 / Pepe, Antonio; Melito, Gian Marco; Egger, Jan (Hrsg.). Berlin: Springer Science and Business Media Deutschland GmbH, 2024, S. 110 – 126
    DOI
  • Li, Jianning; Pepe, Antonio; Luijten, Gijs; Schwarz-Gsaxner, Christina; Kleesiek, Jens; Egger, Jan
    Anatomy Completor : A Multi-class Completion Framework for 3D Anatomy Reconstruction
    In: Shape in Medical Imaging: Proceedings / Wachinger, Christian; Paniagua, Beatriz; Elhabian, Shireen; Li, Jianning; Egger, Jan; International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, October 8, 2023, Vancouver, BC, Canada. Cham; Berlin; Heidelberg: Springer, 2023, S. 1 – 14
    DOI
  • Fragemann, Jana; Liu, Xiao; Li, Jianning; Tsaftaris, Sotirios A.; Egger, Jan; Kleesiek, Jens
    Applying Disentanglement in the Medical Domain : An Introduction for the MAD Workshop
    In: Medical Applications with Disentanglements: First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings / Fragemann, Jana; Li, Jianning; Liu, Xiao; Tsaftaris, Sotirios A.; Egger, Jan; Kleesiek, Jens; First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, 22.09.2022, Singapore. Cham; Berlin, Germany; Heidelberg, Germany; Berlin; Heidelberg; New York, NY: Springer Science and Business Media Deutschland GmbH, 2023, S. 3 – 11
    DOI
  • Adilova, Linara; Abourayya, Amr; Li, Jianning; Dada, Amin; Petzka, Henning; Egger, Jan; Kleesiek, Jens; Kamp, Michael
    FAM: Relative Flatness Aware Minimization
    In: Proceedings of the 2nd Annual Workshop on Topology, Algebra, and Geometry in Machine Learning / 2nd Annual Workshop on Topology, Algebra, and Geometry in Machine Learning, TAG-ML 2023, held at the International Conference on Machine Learning, ICML 2023; Honolulu; 28 July 2023. Maastricht: ML Research Press, 2023, S. 37 – 49
  • Dada, Amin; Chen, Aokun; Peng, Cheng; Smith, Kaleb E.; Idrissi-Yaghir, Ahmad; Seibold, Constantin Marc; Li, Jianning; Heiliger, Lars; Friedrich, Christoph M.; Truhn, Daniel; Egger, Jan; Bian, Jiang; Kleesiek, Jens; Wu, Yonghui
    On the Impact of Cross-Domain Data on German Language Models
    In: The 2023 Conference on Empirical Methods in Natural Language Processing - Findings of the Association for Computational Linguistics: EMNLP 2023 ; December 6-10, 2023 / 2023 Conference on Empirical Methods in Natural Language Processing, EMNLP 2023, December 6-10, 2023, Singapore / Bouamor, Houda; Pino, Juan; Bali, Kalika (Hrsg.). Stroudsburg: Association for Computational Linguistics (ACL), 2023, S. 13801 – 13813
    DOI (Open Access)
  • Eisenmann, M.; Reinke, A.; Weru, V.; Tizabi, M.D.; Isensee, F.; Adler, T.J.; Ali, S.; Andrearczyk, V.; Aubreville, M.; Baid, U.; Bakas, S.; Balu, N.; Bano, S.; Bernal, J.; Bodenstedt, S.; Casella, A.; Cheplygina, V.; Daum, M.; De Bruijne, M.; Depeursinge, A.; Dorent, R.; Egger, Jan; Ellis, D.G.; Engelhardt, S.; Ganz, M.; Ghatwary, N.; Girard, G.; Godau, P.; Gupta, A.; Hansen, L.; Harada, K.; Heinrich, M.; Heller, N.; Hering, A.; Huaulmé, A.; Jannin, P.; Kavur, A.E.; Kodym, O.; Kozubek, M.; Li, J.; Li, H.; Ma, J.; Martín-Isla, C.; Menze, B.; Noble, A.; Oreiller, V.; Padoy, N.; Pati, S.; Payette, K.; Rädsch, T.; Rafael-Patiño, J.; Bawa, V. Singh; Speidel, S.; Sudre, C.H.; Van Wijnen, K.; Wagner, M.; Wei, D.; Yamlahi, A.; Yap, M.H.; Yuan, C.; Zenk, M.; Zia, A.; Zimmerer, D.; Aydogan, D.; Bhattarai, B.; Bloch, L.; Brüngel, R.; Cho, J.; Choi, C.; Dou, Q.; Ezhov, I.; Friedrich, C.M.; Fuller, C.; Gaire, R.R.; Galdran, A.; García Faura, A.; Grammatikopoulou, M.; Hong, S.; Jahanifar, M.; Jang, I.; Kadkhodamohammadi, A.; Kang, I.; Kofler, F.; Kondo, S.; Kuijf, H.; Li, M.; Luu, M.; Martinčič, T.; Morais, P.; Naser, M.A.; Oliveira, B.; Owen, D.; Pang, S.; Park, J.; Park, S.; Płotka, S.; Puybareau, E.; Rajpoot, N.; Ryu, K.; Saeed, N.; Shephard, A.; Shi, P.; Štepec, D.; Subedi, R.; Tochon, G.; Torres, H.R.; Urien, H.; Vilaça, J.L.; Wahid, K.A.; Wang, H.; Wang, J.; Wang, L.; Wang, X.; Wiestler, B.; Wodzinski, M.; Xia, F.; Xie, J.; Xiong, Z.; Yang, S.; Yang, Y.; Zhao, Z.; Maier-Hein, K.; Jäger, P.F.; Kopp-Schneider, A.; Maier-Hein, L.; Faura, Á. García
    Why is the Winner the Best?
    In: 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition: Proceedings / 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition : Vancouver, Canada, 18-22 June 2023. Piscataway: IEEE Computer Society, 2023, S. 19955 – 19966
    DOI, Online Volltext (Open Access)
  • Sulakhe, Harsh; Li, Jianning; Egger, Jan; Goyal, Poonam
    CranGAN : Adversarial Point Cloud Reconstruction for patient-specific Cranial Implant Design
    In: 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) / 44. IEEE Engineering in Medicine and Biology Society ; Annual International Conference, Tuesday, July 12-Friday, July 15, 2022, Glasgow. Piscataway: Institute of Electrical and Electronics Engineers Inc., 2022, S. 603 – 608
    DOI
  • Gsaxner, Christina; Pepe, Antonio; Schmalstieg, Dieter; Li, Jianning; Egger, Jan
    Inside-out instrument tracking for surgical navigation in augmented reality
    In: Proceedings of the 27th ACM Symposium on Virtual Reality Software and Technology / VRST '21: 27th ACM Symposium on Virtual Reality Software and Technology, Osaka Japan, December 8 - 10, 2021. New York: Association for Computing Machinery, 2021
    DOI
  • Li, Jianning; Pepe, Antonio; Gsaxner, Christina; Jin, Yuan; Egger, Jan
    Learning to Rearrange Voxels in Binary Segmentation Masks for Smooth Manifold Triangulation
    In: Towards the Automatization of Cranial Implant Design in Cranioplasty II: Proceedings / Second Challenge, AutoImplant 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, October 1, 2021 / Li, Jianning; Egger, Jan (Hrsg.). Cham: Springer, 2021, S. 45 – 62
    DOI, Online Volltext (Open Access)
  • Yu, Lei; Li, Jianning; Egger, Jan
    PCA-Skull : 3D Skull Shape Modelling Using Principal Component Analysis
    In: Towards the Automatization of Cranial Implant Design in Cranioplasty II: Proceedings / Second Challenge, AutoImplant 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, October 1, 2021 / Li, Jianning; Egger, Jan (Hrsg.). Cham: Springer, 2021, S. 105 – 115
    DOI
  • Kroviakov, Artem; Li, Jianning; Egger, Jan
    Sparse Convolutional Neural Network for Skull Reconstruction
    In: Towards the Automatization of Cranial Implant Design in Cranioplasty II: Proceedings / Second Challenge, AutoImplant 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, October 1, 2021 / Li, Jianning; Egger, Jan (Hrsg.). Cham: Springer, 2021, S. 80 – 94
    DOI

    • Bücher/Sammelwerke/Tagungsbände

  • Shape in Medical Imaging : Proceedings
    International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, October 8, 2023, Vancouver, BC, Canada,
    Cham; Berlin; Heidelberg: Springer, 2023
    (Lecture Notes in Computer Science ; 14350)
    DOI