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Prof. Dr. Johannes Köster

Informatik

Anschrift
Girardetstr. 8, Girardet Haus 8/2
45131 Essen
Telefon
+49 (0)201 723 77819
E-Mail
johannes.koester@uni-due.de

Funktionen

  • Professor/in, Bioinformatische Algorithmen in der Onkologie

Die folgenden Publikationen sind in der Online-Universitätsbibliographie der Universität Duisburg-Essen verzeichnet. Weitere Informationen finden Sie gegebenenfalls auch auf den persönlichen Webseiten der Person.

    Artikel in Zeitschriften

  • Suter, Frédéric; Coleman, Tainã; Altintaş, İlkay; Badia, Rosa M.; Balis, Bartosz; Chard, Kyle; Colonnelli, Iacopo; Deelman, Ewa; Di Tommaso, Paolo; Fahringer, Thomas; Goble, Carole; Jha, Shantenu; Katz, Daniel S.; Köster, Johannes; Leser, Ulf; Mehta, Kshitij; Oliver, Hilary; Peterson, J.-Luc; Pizzi, Giovanni; Pottier, Loïc; Sirvent, Raül; Suchyta, Eric; Thain, Douglas; Wilkinson, Sean R.; Wozniak, Justin M.; Ferreira da Silva, Rafael
    A terminology for scientific workflow systems
    In: Future Generation Computer Systems, Jg. 174, 2026, 107974
    DOI
  • Wilkinson, Sean R.; Aloqalaa, Meznah; Belhajjame, Khalid; Crusoe, Michael R.; de Paula Kinoshita, Bruno; Gadelha, Luiz; Garijo, Daniel; Gustafsson, Ove Johan Ragnar; Juty, Nick; Kanwal, Sehrish; Khan, Farah Zaib; Köster, Johannes; Peters-von Gehlen, Karsten; Pouchard, Line; Rannow, Randy K.; Soiland-Reyes, Stian; Soranzo, Nicola; Sufi, Shoaib; Sun, Ziheng; Vilne, Baiba; Wouters, Merridee A.; Yuen, Denis; Goble, Carole
    Applying the FAIR Principles to computational workflows
    In: Scientific Data, Jg. 12, 2025, Nr. 1, 328
    DOI (Open Access)
  • Wiegand, Felix; Lähnemann, David; Mölder, Felix; Uzuner, Hamdiye; Prinz, Adrian; Schramm, Alexander; Köster, Johannes
    Datavzrd : Rapid programming- and maintenance-free interactive visualization and communication of tabular data
    In: PLoS ONE, Jg. 20, 2025, Nr. 7, e0323079
    DOI (Open Access)
  • Rausch, Tobias; Schäfer, Hendrik; Bein, Julia; Mölder, Felix; Beeck, Lilian Kara; Kölsch, Bernd; Borchert, Sabrina; Benes, Vladimir; Halbsguth, Teresa; Brunnberg, Uta; Oellerich, Thomas; Tousseyn, Thomas; Ponzoni, Maurilio; Köster, Johannes; Hansmann, Martin-Leo; Küppers, Ralf; Hartmann, Sylvia
    Genetic lesions in nodular lymphocyte-predominant Hodgkin lymphoma and T cell/histiocyte-rich large B-cell lymphoma identified by whole genome sequencing
    In: Leukemia, Jg. 39, 2025, Nr. 9, S. 2215 – 2225
    DOI (Open Access)
  • Wiegand, Felix; Köster, Johannes
    Komplexe Tabellen verständlich machen
    In: Biospektrum, Jg. 31, 2025, Nr. 5, S. 588 – 589
    DOI (Open Access)
  • Mölder, Felix; Jablonski, Kim Philipp; Letcher, Brice; Hall, Michael B.; van Dyken, Peter C.; Tomkins-Tinch, Christopher H.; Sochat, Vanessa; Forster, Jan; Vieira, Filipe G.; Meesters, Christian; Lee, Soohyun; Twardziok, Sven O.; Kanitz, Alexander; VanCampen, Jake; Malladi, Venkat; Wilm, Andreas; Holtgrewe, Manuel; Rahmann, Sven; Nahnsen, Sven; Köster, Johannes; Forster, Jan; Lee, Soohyun
    Sustainable data analysis with Snakemake
    In: F1000Research, Jg. 10, 2025, 33
    DOI, Online Volltext (Open Access)
  • Petersen, Malte; Hellmann, Sören Lukas; Böker, Florian; Brand, Fabian; Kumar, Aasish; Paleico, Martin Leandro; Köster, Johannes; Meesters, Christian
    Teaching Reproducible Data Analysis for HPC Users : The Snakemake HPC Teaching Alliance
    In: Electronic Communications of the EASST, Jg. 83, 2025
    DOI (Open Access)
  • Hanssen, Friederike; Gabernet, Gisela; Bäuerle, Famke; Stöcker, Bianca; Wiegand, Felix; Smith, Nicholas H.; Mertes, Christian; Neogi, Avirup Guha; Brandhoff, Leon; Ossowski, Anna; Altmueller, Janine; Becker, Kerstin; Petzold, Andreas; Sturm, Marc; Stöcker, Tyll; Sivalingam, Sugirthan; Brand, Fabian; Schmidt, Axel; Buness, Andreas; Probst, Alexander J.; Motameny, Susanne; Köster, Johannes
    NCBench : providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling
    In: F1000Research, Jg. 12, 2024, 1125
    DOI (Open Access)
  • Uzuner, Hamdiye; Paschen, Annette; Schadendorf, Dirk; Köster, Johannes
    Orthanq: transparent and uncertainty-aware haplotype quantification with application in HLA-typing
    In: BMC Bioinformatics, Jg. 25, 2024, Nr. 1, 240
    DOI (Open Access)
  • Thomas, Alexander; Battenfeld, Thomas; Kraiselburd, Ivana; Anastasiou, Olympia; Dittmer, Ulf; Dörr, Ann-Kathrin; Dörr, Adrian; Elsner, Carina; Gosch, Jule; Le-Trilling, Vu Thuy Khanh; Magin, Simon; Scholtysik, René; Yilmaz, Pelin; Trilling, Mirko; Schöler, Lara; Köster, Johannes; Meyer, Folker
    UnCoVar : A reproducible and scalable workflow for transparent and robust virus variant calling and lineage assignment using SARS-CoV-2 as an example
    In: BMC Genomics, Jg. 25, 2024, Nr. 1, 647
    DOI, Online Volltext (Open Access)
  • Hanssen, Friederike; Gabernet, Gisela; Smith, Nicholas H.; Mertes, Christian; Neogi, Avirup Guha; Brandhoff, Leon; Ossowski, Anna; Altmueller, Janine; Becker, Kerstin; Petzold, Andreas; Sturm, Marc; Stöcker, Tyll; Sivalingam, Sugirthan; Brand, Fabian; Schmid, Axel; Buness, Andreas; Probst, Alexander J.; Motameny, Susanne; Köster, Johannes
    NCBench: providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling
    In: F1000Research, Jg. 12, 2023, 1125
    DOI, Online Volltext (Open Access)

    • Preprints

  • Egetemaier, Stefanie; Chauvistré, Heike; Váraljai, Renáta; Hua, Yichao; Lueong, Smiths; Makhzami, Samira; Srinivas, Nalini; Forster, Jan; Ullrich, Vivien; Stupia, Simone; Schroeder, Valéria; Scharfenberg, Sarah; Hoewner, Anna; Shannan, Batool; Siveke, Jens; Baietti, Maria Francesca; Leucci, Eleonora; Marine, Jean-Christophe; Paschen, Annette; Scheffler, Björn; Engel, Daniel R.; Becker, Lisa; Nensa, Felix; Köster, Johannes; Grünwald, Barbara; Poepsel, Simon; Ninck, Sabrina; Kaschani, Farnusch; Schadendorf, Dirk; Becker, Jürgen; Tasdogan, Alpaslan; Rambow, Florian; Rösch, Alexander
    Redirecting resistance evolution in BRAFV600 melanoma by inhibition of the peroxiredoxin-thioredoxin system
    2025
    DOI (Open Access)