Publications

Publications

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    2025

  • Deep, Aman; Sieber, Guido; Boden, Lisa; David, Gwendoline M.; Baikova, Daria; Buchner, Dominik; Starke, Jörn; Stach, Tom L.; Reinders, Torben; Hadžiomerović, Una; Beszteri, Sára; Probst, Alexander J.; Boenigk, Jens; Beisser, Daniela
    A metatranscriptomic exploration of fungal and bacterial contributions to allochthonous leaf litter decomposition in the streambed
    In: PeerJ, Vol. 13, 2025, Nr. 4, e19120
    DOI, Online Full Text (Open Access)
  • Hug, Laura A.; Hatzenpichler, Roland; Moraru, Liliana Cristina; Soares, André R.; Meyer, Folker; Heyder, Anke; Probst, Alexander J.; The Data Reuse Consortium
    A roadmap for equitable reuse of public microbiome data
    In: Nature Microbiology, Vol. 10, 2025, Nr. 10, pp. 2384 – 2395
    DOI
  • Sures, Katharina; Esser, Sarah P.; Bornemann, Till; Moore, Carrie J.; Soares, André; Plewka, Julia; Figueroa-Gonzalez, Perla Abigail; Ruff, S. Emil; Moraru, Liliana Cristina; Probst, Alexander J.
    Acquisition of Spacers from Foreign Prokaryotic Genomes by CRISPR-Cas Systems in Natural Environments
    In: Genome Biology and Evolution, Vol. 17, 2025, Nr. 11, evaf201
    DOI (Open Access)
  • Hug, Laura A.; Hatzenpichler, Roland; Moraru, Cristina; Soares, André R.; Meyer, Folker; Heyder, Anke; Probst, Alexander J.; The Data Reuse Consortium
    Author Correction: A roadmap for equitable reuse of public microbiome data
    In: Nature Microbiology, 2025, in press
    DOI (Open Access)
  • Trubl, Gareth; Probst, Alexander J.
    Clarifying Terminology in Microbial Ecology : A Call for Precision in Scientific Communication
    In: Environmental Microbiology, Vol. 27, 2025, Nr. 9, e70177
    DOI
  • Stach, Tom L.; Deep, Aman; Madge Pimentel, Iris; Buchner, Dominik; Borton, Mikayla A.; Soares, André; Starke, Jörn; Bornemann, Till; Rehsen, Philipp M.; Dreger, Ken; Boenigk, Jens; Vos, Matthijs; Leese, Florian; Beisser, Daniela; Probst, Alexander J.
    Complex compositional and metabolic response of river sediment microbiomes to multiple anthropogenic stressors
    In: ISME Communications: New Developments in Microbial Ecology, 2025, in press
    DOI (Open Access)
  • Esser, Sarah P.; Turzynski, Victoria; Plewka, Julia; Nuy, Julia; Moore, Carrie J.; Banas, Indra; Soares, André R.; Lee, Janey; Woyke, Tanja; Probst, Alexander J.
    Differential Expression of Core Metabolic Functions in Candidatus Altiarchaeum Inhabiting Distinct Subsurface Ecosystems
    In: Environmental Microbiology Reports, Vol. 17, 2025, Nr. 3, e70096
    DOI (Open Access)
  • Simon, Sophie A.; Aschmann, Vera; Behrendt, Annika; Hügler, Michael; Engl, Lisa M.; Pohlner, Marion; Rolfes, Sönke; Brinkhoff, Thorsten; Engelen, Bert; Könneke, Martin; Rodriguez-R, Luis M.; Bornemann, Till; Nuy, Julia K.; Rothe, Louisa; Stach, Tom L.; Beblo-Vranesevic, Kristina; Leuko, Stefan; Runzheimer, Katharina; Möller, Ralf; Conrady, Marius; Huth, Markus; Trabold, Thomas; Herkendell, Katharina; Probst, Alexander J.
    Earth's most needed uncultivated aquatic prokaryotes
    In: Water Research, Vol. 273, 2025, 122928
    DOI (Open Access)
  • Lian, Guoxi; Zhang, Tianjing; An, Yifu; Xu, Huiying; Sun, Juan; Yin, Ran; Shen, Zhenyao; Guo, Huaming; Bornemann, Till L. V.; Probst, Alexander J.; Xiu, Wei
    Genome-Resolved Metagenomic Insights Into Aquifer Microbiome Adaptations Following Two Decades of Neutral In Situ Leaching
    In: Journal of Geophysical Research: JGR / Biogeosciences, Vol. 130, 2025, Nr. 9, e2024JG008587
    DOI
  • Simon, Sophie A; Soares, André R.; Bornemann, Till L. V.; Lange, Adrian; Griesdorn, Lea; Fuentes, Adrián; Dieckmann, Marie; Krok, Beate; Ruff, S Emil; Hügler, Michael; Moraru, Cristina; Probst, Alexander J.
    Inferring replication states of bacteria and viruses in enrichment cultures via long-read sequencing
    In: ISME Communications: New Developments in Microbial Ecology, Vol. 5, 2025, Nr. 1, ycaf041
    DOI, Online Full Text (Open Access)
  • Schnabel, Ellen; Vuillemin, Aurèle; Laczny, Cédric C.; Kunath, Benoit J.; Soares, André R.; Probst, Alexander J.; Di Primio, Rolando; Kallmeyer, Jens; Wilmes, Paul; Becher, Dörte; Rattei, Thomas; Trautwein-Schult, Anke; Mangelsdorf, Kai; Okolski, Steffen; Kitte, J. Axel; Hickl, Oskar; Lowndes, Tuesday; Zafar, Zainab; Esser, Sarah; Ostrzinski, Anne; Grund, Sebastian; Pfundner, Alexander; PROSPECTOMICS Consortium
    Influence of minor hydrocarbon seepage on sulfur cycling in marine subsurface sediments
    In: Biogeosciences (BG), Vol. 22, 2025, Nr. 3, pp. 767 – 784
    DOI (Open Access)
  • Vosough, Maryam; Drees, Felix; Sieber, Guido; Stach, Tom L.; Beisser, Daniela; Probst, Alexander J.; Boenigk, Jens; Schmidt, Torsten C.
    Integrative Analysis of Nontargeted LC-HRMS and High-Throughput Metabarcoding Data for Aquatic Environmental Studies Using Combined Multivariate Statistical Approaches
    In: Analytical Chemistry, Vol. 97, 2025, Nr. 22, pp. 11563 – 11571
    DOI (Open Access)
  • Plewka, Julia; Alibrandi, Armando; Bornemann, Till; Esser, Sarah P; Stach, Tom L; Sures, Katharina; Becker, Jannis; Moraru, Liliana Cristina; Soares, André; di Primio, Rolando; Kallmeyer, Jens; Probst, Alexander J.
    Metagenomic analysis of pristine oil sheds new light on the global distribution of microbial genetic repertoire in hydrocarbon-associated ecosystems
    In: microLife, Vol. 6, 2025, uqae027
    DOI, Online Full Text (Open Access)
  • Bornemann, Till Leander Valentin; Probst, Alexander J.
    Metaproteogenomik zur Identifizierung unkultivierter Schlüsselorganismen
    In: Biospektrum, Vol. 31, 2025, Nr. 7, pp. 727 – 729
    DOI (Open Access)
  • Sessions, Alex L.; Magnabosco, Cara; Barton, Hazel A.; Burkhardt, Christoph; Dworkin, Jason P.; Freissinet, Caroline; French, Katherine L.; Glavin, Daniel P.; Leys, Natalie; Maixner, Frank; Olsson-Francis, Karen; Probst, Alexander J.; Quitté, Ghylaine; Rampe, Elizabeth; Steele, Andrew; Carrier, Brandi L.; Hays, Lindsay E.; Thiessen, Fiona; Paardekooper, Daniel; Hutzler, Aurore; Harrington, Andrea D.; Teece, Bronwyn L.
    Planning Considerations Related to Contamination Control for the Return and Analysis of Martian Samples
    In: Astrobiology, Vol. 25, 2025, Nr. 10, pp. 694 – 724
    DOI (Open Access)
  • Ostrzinski, Anne; Kunath, Benoit J; Soares, André Rodrigues; Laczny, Cédric C; Halder, Rashi; Kallmeyer, Jens; Di Primio, Rolando; Wilmes, Paul; Probst, Alexander J; Trautwein-Schult, Anke; Becher, Dörte; Rodrigues Soares, André
    Systematic evaluation of protein extraction for metaproteomic analysis of marine sediment with high clay content
    In: ISME Communications: New Developments in Microbial Ecology, Vol. 5, 2025, Nr. 1, ycaf074
    DOI (Open Access)
  • Stach, Tom L.; Starke, Jörn; Bouderka, Feriel; Bornemann, Till; Soares, André; Wilkins, Michael J.; Goldman, Amy E.; Stegen, James C.; Borton, Mikayla A.; Probst, Alexander J.
    A uniform stress response of stream microbiomes in the hyporheic zone across North America
    2025
    DOI (Open Access)

    • 2024

  • Ruff, S. Emil; de Angelis, Isabella Hrabe; Mullis, Megan; Payet, Jérôme P.; Magnabosco, Cara; Lloyd, Karen G.; Sheik, Cody S.; Steen, Andrew D.; Shipunova, Anna; Morozov, Aleksey; Reese, Brandi Kiel; Bradley, James A.; Lemonnier, Clarisse; Schrenk, Matthew O.; Joye, Samantha B.; Huber, Julie A.; Probst, Alexander J.; Morrison, Hilary G.; Sogin, Mitchell L.; Ladau, Joshua; Colwell, Frederick
    A global comparison of surface and subsurface microbiomes reveals large-scale biodiversity gradients, and a marine-terrestrial divide
    In: Science Advances, Vol. 10, 2024, Nr. 51, eadq0645
    DOI (Open Access)
  • Valentin-Alvarado, Luis E.; Fakra, Sirine C.; Probst, Alexander J.; Giska, Jonathan R.; Jaffe, Alexander L.; Oltrogge, Luke M.; West-Roberts, Jacob; Rowland, Joel; Manga, Michael; Savage, David F.; Greening, Chris; Baker, Brett J.; Banfield, Jillian F.
    Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism
    In: Microbiome, Vol. 12, 2024, Nr. 1, 15
    DOI (Open Access)
  • Esser, Sarah P.; Probst, Alexander J.
    CRISPR-Cas in unkultivierten Archaeen : Vielfältige Funktionen von CRISPR-Cas-Systemen
    In: Biologie in unserer Zeit, Vol. 54, 2024, pp. 82 – 86
    DOI (Open Access)
  • Ninck, Sabrina; Klaus, Thomas; Kochetkova, Tatiana V.; Esser, Sarah P.; Sewald, Leonard; Kaschani, Farnusch; Bräsen, Christopher; Probst, Alexander J.; Kublanov, Ilya V.; Siebers, Bettina; Kaiser, Markus
    Environmental activity-based protein profiling for function-driven enzyme discovery from natural communities
    In: Environmental Microbiomes, Vol. 19, 2024, Nr. 1, 36
    DOI, Online Full Text (Open Access)
  • Novikova, Polina V; Bhanu Busi, Susheel; Probst, Alexander J.; May, Patrick; Wilmes, Paul
    Functional prediction of proteins from the human gut archaeome
    In: ISME Communications: New Developments in Microbial Ecology, Vol. 4, 2024, Nr. 1
    DOI (Open Access)
  • Shah, Manan; Bornemann, Till; Nuy, Julia; Hahn, Martin W.; Probst, Alexander J.; Beisser, Daniela; Boenigk, Jens
    Genome-resolved metagenomics reveals the effect of nutrient availability on bacterial genomic properties across 44 European freshwater lakes
    In: Environmental Microbiology, Vol. 26, 2024, Nr. 6, e16634
    DOI (Open Access)
  • Lezcano, María Ángeles; Bornemann, Till; Sánchez-García, Laura; Carrizo, Daniel; Adam, Panagiotis; Esser, Sarah P.; Cabrol, Nathalie A.; Probst, Alexander J.; Parro, Víctor
    Hyperexpansion of genetic diversity and metabolic capacity of extremophilic bacteria and archaea in ancient Andean lake sediments
    In: Microbiome, Vol. 12, 2024, Nr. 1, 176
    DOI (Open Access)
  • Figueroa-Gonzalez, Perla Abigail; Bornemann, Till L. V.; Hinzke, Tjorven; Maaß, Sandra; Trautwein-Schult, Anke; Starke, Joern; Moore, Carrie J.; Esser, Sarah P.; Plewka, Julia; Hesse, Tobias; Schmidt, Torsten C.; Schreiber, Ulrich; Bor, Batbileg; Becher, Dörte; Probst, Alexander J.
    Metaproteogenomics resolution of a high-CO₂ aquifer community reveals a complex cellular adaptation of groundwater Gracilibacteria to a host-dependent lifestyle
    In: Microbiome, Vol. 12, 2024, Nr. 1, 194
    DOI (Open Access)
  • Lee, Kang Soo; Landry, Zachary; Athar, Awais; Alcolombri, Uria; Pramoj Na Ayutthaya, Pratchaya; Berry, David; de Bettignies, Philippe; Cheng, Ji-Xin; Csucs, Gabor; Cui, Li; Deckert, Volker; Dieing, Thomas; Dionne, Jennifer; Doskocil, Ondrej; D’Souza, Glen; García-Timermans, Cristina; Gierlinger, Notburga; Goda, Keisuke; Hatzenpichler, Roland; Henshaw, Richard J.; Huang, Wei E.; Iermak, Ievgeniia; Ivleva, Natalia P.; Kneipp, Janina; Kubryk, Patrick; Küsel, Kirsten; Lee, Tae Kwon; Lee, Sung Sik; Ma, Bo; Martínez-Pérez, Clara; Matousek, Pavel; Meckenstock, Rainer; Min, Wei; Mojzeš, Peter; Müller, Oliver; Kumar, Naresh; Nielsen, Per Halkjær; Notingher, Ioan; Palatinszky, Márton; Pereira, Fátima C.; Pezzotti, Giuseppe; Pilat, Zdenek; Plesinger, Filip; Popp, Jürgen; Probst, Alexander J.; Riva, Alessandra; Saleh, Amr. A. E.; Samek, Ota; Sapers, Haley M.; Schubert, Olga T.; Stubbusch, Astrid K. M.; Tadesse, Loza F.; Taylor, Gordon T.; Wagner, Michael; Wang, Jing; Yin, Huabing; Yue, Yang; Zenobi, Renato; Zini, Jacopo; Sarkans, Ugis; Stocker, Roman
    MicrobioRaman : an open-access web repository for microbiological Raman spectroscopy data
    In: Nature Microbiology, 2024, Nr. 9, pp. 1152 – 1156
    DOI, Online Full Text (Open Access)
  • Rocha, Ulisses; Coelho Kasmanas, Jonas; Kallies, René; Saraiva, Joao Pedro; Toscan, Rodolfo Brizola; Štefanič, Polonca; Bicalho, Marcos Fleming; Borim Correa, Felipe; Baştürk, Merve Nida; Fousekis, Efthymios; Viana Barbosa, Luiz Miguel; Plewka, Julia; Probst, Alexander J.; Baldrian, Petr; Stadler, Peter F.
    MuDoGeR : Multi-Domain Genome recovery from metagenomes made easy
    In: Molecular Ecology Resources, Vol. 24, 2024, Nr. 2, e13904
    DOI (Open Access)
  • Hanssen, Friederike; Gabernet, Gisela; Bäuerle, Famke; Stöcker, Bianca; Wiegand, Felix; Smith, Nicholas H.; Mertes, Christian; Neogi, Avirup Guha; Brandhoff, Leon; Ossowski, Anna; Altmueller, Janine; Becker, Kerstin; Petzold, Andreas; Sturm, Marc; Stöcker, Tyll; Sivalingam, Sugirthan; Brand, Fabian; Schmidt, Axel; Buness, Andreas; Probst, Alexander J.; Motameny, Susanne; Köster, Johannes
    NCBench : providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling
    In: F1000Research, Vol. 12, 2024, 1125
    DOI (Open Access)
  • Táncsics, András; Bedics, Anna; Banerjee, Sinchan; Soares, André; Baka, Erzsébet; Probst, Alexander J.; Kriszt, Balázs
    Stable-isotope probing combined with amplicon sequencing and metagenomics identifies key bacterial benzene degraders under microaerobic conditions
    In: Biologia Futura, Vol. 75, 2024, Nr. 3, pp. 301 – 311
    DOI (Open Access)
  • Wirbel, Jakob; Bhatt, Ami S.; Probst, Alexander J.
    The journey to understand previously unknown microbial genes
    In: Nature, Vol. 626, 2024, Nr. 7998, pp. 267 – 269
    DOI
  • Moore, Carrie Julia; Bornemann, Till; Figueroa-Gonzalez, Perla Abigail; Esser, Sarah P; Moraru, Liliana Cristina; Soares, André; Hinzke, Tjorven; Trautwein-Schult, Anke; Maaß, Sandra; Becher, Dörte; Starke, Joern; Plewka, Julia; Rothe, Lousia; Probst, Alexander J.
    Time-series metaproteogenomics of a high-CO2 aquifer reveals active viruses with fluctuating abundances and broad host ranges
    In: microLife, Vol. 5, 2024, uqae011
    DOI, Online Full Text (Open Access)
  • Stach, Tom Lennard; Deep, Aman; Madge Pimentel, Iris; Buchner, Dominik; Borton, Mikayla; Soares, André; Starke, Joern; Bornemann, Till; Rehsen, Philipp M.; Boenigk, Jens; Vos, Matthijs; Leese, Florian; Beisser, Daniela; Probst, Alexander J.
    Complex compositional and cellular response of river sediment microbiomes to multiple anthropogenic stressors
    2024
    DOI (Open Access)

    • 2023

  • Esser, Sarah P.; Rahlff, Janina; Zhao, Weishu; Predl, Michael; Plewka, Julia; Sures, Katharina; Wimmer, Franziska; Lee, Janey; Adam, Panagiotis; McGonigle, Julia; Turzynski, Victoria; Banas, Indra; Schwank, Katrin; Krupovic, Mart; Bornemann, Till L. V.; Figueroa-Gonzalez, Perla Abigail; Jarett, Jessica; Rattei, Thomas; Amano, Yuki; Blaby, Ian K.; Cheng, Jan-Fang; Brazelton, William J.; Beisel, Chase L.; Woyke, Tanja; Zhang, Ying; Probst, Alexander J.
    A predicted CRISPR-mediated symbiosis between uncultivated archaea
    In: Nature Microbiology, Vol. 8, 2023, Nr. 9, pp. 1619 – 1633
    DOI
  • Meyer, Benjamin; Pannekens, Mark; Soares, André; Timmermann, Lara; Probst, Alexander J.; Hippelein, Martin; Bendinger, Bernd; Nocker, Andreas
    Bacterial populations in different parts of domestic drinking water systems are distinct and adapted to the given ambient temperatures
    In: Frontiers in Water, Vol. 5, 2023, 1119951
    DOI (Open Access)
  • Simon, Sophie A.; Schmidt, Katharina; Griesdorn, Lea; Soares, André R.; Bornemann, Till L. V.; Probst, Alexander J.
    Dancing the Nanopore limbo – Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction
    In: BMC Genomics, Vol. 24, 2023, Nr. 1, 727
    DOI, Online Full Text (Open Access)
  • Sieber, Guido; Drees, Felix; Shah, Manan; Stach, Tom L.; Hohrenk-Danzouma, Lotta; Bock, Christina; Vosough, Maryam; Schumann, Mark; Sures, Bernd; Probst, Alexander J.; Schmidt, Torsten Claus; Beisser, Daniela; Boenigk, Jens
    Exploring the efficacy of metabarcoding and non-target screening for detecting treated wastewater
    In: Science of the Total Environment, Vol. 903, 2023, 167457
    DOI (Open Access)
  • Rahlff, Janina; Esser, Sarah P.; Plewka, Julia; Heinrichs, Mara Elena; Soares, André; Scarchilli, Claudio; Grigioni, Paolo; Wex, Heike; Giebel, Helge-Ansgar; Probst, Alexander J.
    Marine viruses disperse bidirectionally along the natural water cycle
    In: Nature Communications, Vol. 14, 2023, Nr. 1, 6354
    DOI, Online Full Text (Open Access)
  • Hanssen, Friederike; Gabernet, Gisela; Smith, Nicholas H.; Mertes, Christian; Neogi, Avirup Guha; Brandhoff, Leon; Ossowski, Anna; Altmueller, Janine; Becker, Kerstin; Petzold, Andreas; Sturm, Marc; Stöcker, Tyll; Sivalingam, Sugirthan; Brand, Fabian; Schmid, Axel; Buness, Andreas; Probst, Alexander J.; Motameny, Susanne; Köster, Johannes
    NCBench: providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling
    In: F1000Research, Vol. 12, 2023, 1125
    DOI, Online Full Text (Open Access)
  • Pápai, Márton; Benedek, Tibor; Táncsics, András; Bornemann, Till L. V.; Plewka, Julia; Probst, Alexander J.; Hussein, Daood; Maróti, Gergely; Menashe, Ofir; Kriszt, Balázs
    Selective enrichment, identification, and isolation of diclofenac, ibuprofen, and carbamazepine degrading bacteria from a groundwater biofilm
    In: Environmental Science and Pollution Research (ESPR), Vol. 30, 2023, Nr. 15, pp. 44518 – 44535
    DOI (Open Access)
  • Banas, Indra; Esser, Sarah P.; Turzynski, Victoria; Soares, André; Novikova, Polina; May, Patrick; Moraru, Cristina; Hasenberg, Mike; Rahlff, Janina; Wilmes, Paul; Klingl, Andreas; Probst, Alexander J.
    Spatio-functional organization in virocells of small uncultivated archaea from the deep biosphere
    In: ISME Journal, Vol. 17, 2023, Nr. 10, pp. 1789 – 1792
    DOI (Open Access)
  • Stach, Tom L.; Sieber, Guido; Shah, Manan; Simon, Sophie A.; Soares, André; Bornemann, Till L. V.; Plewka, Julia; Künkel, Julian; Becker, Christian; Meyer, Folker; Boenigk, Jens; Probst, Alexander J.
    Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater
    In: MicrobiologyOpen, Vol. 12, 2023, Nr. 2, e1347
    DOI, Online Full Text (Open Access)
  • Vos, Matthijs; Hering, Daniel; Gessner, Mark O.; Leese, Florian; Schäfer, Ralf B.; Tollrian, Ralph; Boenigk, Jens; Haase, Peter; Meckenstock, Rainer; Baikova, Daria; Bayat, Helena; Beermann, Arne; Beißer, Daniela; Beszteri, Bánk; Birk, Sebastian; Boden, Lisa; Brauer, Verena; Brauns, Mario; Buchner, Dominik; Burfeid-Castellanos, Andrea; David, Gwendoline; Deep, Aman; Doliwa, Annemie; Dunthorn, Micah; Enß, Julian; Escobar-Sierra, Camilo; Feld, Christian K.; Fohrer, Nicola; Grabner, Daniel; Hadziomerovic, Una; Jähnig, Sonja C.; Jochmann, Maik; Khaliq, Shaista; Kiesel, Jens; Kuppels, Annabel; Lampert, Kathrin P.; Le, T.T. Yen; Lorenz, Armin W.; Madariaga, Graciela Medina; Meyer, Benjamin; Pantel, Jelena H.; Madge Pimentel, Iris; Mayombo, Ntambwe Serge; Nguyen, Hong Hanh; Peters, Kristin; Pfeifer, Svenja M.; Prati, Sebastian; Probst, Alexander J.; Reiner, Dominik; Rolauffs, Peter; Schlenker, Alexandra; Schmidt, Torsten C.; Shah, Mana; Sieber, Guido; Stach, Tom Lennard; Tielke, Ann-Kathrin; Vermiert, Anna-Maria; Weiss, Martina; Weitere, Markus; Sures, Bernd
    The Asymmetric Response Concept explains ecological consequences of multiple stressor exposure and release
    In: Science of the Total Environment, Vol. 872, 2023, 162196
    DOI
  • Turzynski, Victoria; Griesdorn, Lea; Moraru, Cristina; Soares, André; Simon, Sophie A.; Stach, Tom L.; Rahlff, Janina; Esser, Sarah P.; Probst, Alexander J.
    Virus-Host Dynamics in Archaeal Groundwater Biofilms and the Associated Bacterial Community Composition
    In: Viruses, Vol. 15, 2023, Nr. 4, 910
    DOI (Open Access)
  • Bornemann, Till L. V.; Esser, Sarah P.; Stach, Tom L.; Burg, Tim; Probst, Alexander J.
    uBin : A manual refining tool for genomes from metagenomes
    In: Environmental Microbiology, Vol. 25, 2023, Nr. 6, pp. 1077 – 1083
    DOI (Open Access)

    • 2022

  • Meyer, Benjamin H.; Adam, Panagiotis; Wagstaff, Ben A.; Kolyfetis, George E.; Probst, Alexander J.; Albers, Sonja V.; Dorfmueller, Helge C.
    Agl24 is an ancient archaeal homolog of the eukaryotic N-glycan chitobiose synthesis enzymes
    In: eLife, Vol. 11, 2022, e67448
    DOI (Open Access)
  • Overholt, Will A.; Trumbore, Susan; Xu, Xiaomei; Bornemann, Till L. V.; Probst, Alexander J.; Krüger, Markus; Herrmann, Martina; Thamdrup, Bo; Bristow, Laura A.; Taubert, Martin; Schwab, Valérie F.; Hölzer, Martin; Marz, Manja; Küsel, Kirsten
    Carbon fixation rates in groundwater similar to those in oligotrophic marine systems
    In: Nature Geoscience, Vol. 15, 2022, Nr. 7, pp. 561 – 567
    DOI (Open Access)
  • Whitman, William B.; Chuvochina, Maria; Hedlund, Brian P.; Hugenholtz, Philip; Konstantinidis, Konstantinos T.; Murray, Alison E.; Palmer, Marike; Parks, Donovan H.; Probst, Alexander J.; Reysenbach, Anna-Louise; Rodriguez-R, Luis M.; Rossello-Mora, Ramon; Sutcliffe, Iain; Venter, Stephanus N.
    Development of the SeqCode : A proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type
    In: Systematic and Applied Microbiology, Vol. 45, 2022, Nr. 5, 126305
    DOI (Open Access)
  • Monsees, Indra; Turzynski, Victoria; Esser, Sarah P.; Soares, Andre; Timmermann, Lara I.; Weidenbach, Katrin; Banas, Jarno; Kloster, Michael; Beszteri, Bank; Schmitz, Ruth A.; Probst, Alexander J.
    Erratum for Monsees et al., “Label-Free Raman Microspectroscopy for Identifying Prokaryotic Virocells”
    In: mSystems, Vol. 7, 2022, Nr. 2, e00162-22
    DOI (Open Access)
  • Neri, Uri; Wolf, Yuri I.; Roux, Simon; Camargo, Antonio Pedro; Lee, Benjamin; Kazlauskas, Darius; Chen, I. Min; Ivanova, Natalia; Zeigler Allen, Lisa; Paez-Espino, David; Bryant, Donald A.; Bhaya, Devaki; Narrowe, Adrienne B.; Probst, Alexander J.; Sczyrba, Alexander; Kohler, Annegret; Séguin, Armand; Shade, Ashley; Campbell, Barbara J.; Lindahl, Björn D.; Reese, Brandi Kiel; Roque, Breanna M.; DeRito, Chris; Averill, Colin; Cullen, Daniel; Beck, David A.C.; Walsh, David A.; Ward, David M.; Wu, Dongying; Eloe-Fadrosh, Emiley; Brodie, Eoin L.; Young, Erica B.; Lilleskov, Erik A.; Castillo, Federico J.; Martin, Francis M.; LeCleir, Gary R.; Attwood, Graeme T.; Cadillo-Quiroz, Hinsby; Simon, Holly M.; Hewson, Ian; Grigoriev, Igor V.; Tiedje, James M.; Jansson, Janet K.; Lee, Janey; VanderGheynst, Jean S.; Dangl, Jeff; Bowman, Jeff S.; Blanchard, Jeffrey L.; Bowen, Jennifer L.; Xu, Jiangbing; Banfield, Jillian F.; Deming, Jody W.; Kostka, Joel E.; Gladden, John M.; Rapp, Josephine Z.; Sharpe, Joshua; McMahon, Katherine D.; Treseder, Kathleen K.; Bidle, Kay D.; Wrighton, Kelly C.; Thamatrakoln, Kimberlee; Nusslein, Klaus; Meredith, Laura K.; Ramirez, Lucia; Buee, Marc; Huntemann, Marcel; Kalyuzhnaya, Marina G.; Waldrop, Mark P.; Sullivan, Matthew B.; Schrenk, Matthew O.; Hess, Matthias; Vega, Michael A.; O'Malley, Michelle A.; Medina, Monica; Gilbert, Naomi E.; Delherbe, Nathalie; Mason, Olivia U.; Dijkstra, Paul; Chuckran, Peter F.; Baldrian, Petr; Constant, Philippe; Stepanauskas, Ramunas; Daly, Rebecca A.; Lamendella, Regina; Gruninger, Robert J.; McKay, Robert M.; Hylander, Samuel; Lebeis, Sarah L.; Esser, Sarah P.; Acinas, Silvia G.; Wilhelm, Steven S.; Singer, Steven W.; Tringe, Susannah S.; Woyke, Tanja; Reddy, T.B.K.; Bell, Terrence H.; Mock, Thomas; McAllister, Tim; Thiel, Vera; Denef, Vincent J.; Liu, Wen-Tso; Martens-Habbena, Willm; Allen Liu, Xiao-Jun; Cooper, Zachary S.; Wang, Zhong; Krupovic, Mart; Dolja, Valerian V.; Kyrpides, Nikos C.; Koonin, Eugene V.; Gophna, Uri; O’Malley, Michelle A.
    Expansion of the global RNA virome reveals diverse clades of bacteriophages
    In: Cell, Vol. 185, 2022, Nr. 21, pp. 4023 – 4037.e18
    DOI (Open Access)
  • Bornemann, Till L. V.; Adam, Panagiotis; Turzynski, Victoria; Schreiber, Ulrich; Figueroa-Gonzalez, Perla Abigail; Rahlff, Janina; Köster, Daniel; Schmidt, Torsten Claus; Schunk, Ralf; Krauthausen, Bernhard; Probst, Alexander J.
    Genetic diversity in terrestrial subsurface ecosystems impacted by geological degassing
    In: Nature Communications, Vol. 13, 2022, Nr. 1, 284
    DOI, Online Full Text (Open Access)
  • Adam, Panagiotis; Kolyfetis, George E.; Bornemann, Till L.V.; Vorgias, Constantinos E.; Probst, Alexander J.
    Genomic remnants of ancestral methanogenesis and hydrogenotrophy in Archaea drive anaerobic carbon cycling
    In: Science Advances, Vol. 8, 2022, Nr. 44, abm9651
    DOI (Open Access)
  • Rahlff, Janina; Bornemann, Till L V; Lopatina, Anna; Severinov, Konstantin; Probst, Alexander J.
    Host-Associated Phages Disperse across the Extraterrestrial Analogue Antarctica
    In: Applied and Environmental Microbiology, Vol. 88, 2022, Nr. 10, e0031522
    DOI, Online Full Text (Open Access)
  • Monsees, Indra; Turzynski, Victoria; Esser, Sarah P.; Soares, André; Timmermann, Lara I.; Weidenbach, Katrin; Banas, Jarno; Kloster, Michael; Beszteri, Bank; Schmitz, Ruth A.; Probst, Alexander J.
    Label-Free Raman Microspectroscopy for Identifying Prokaryotic Virocells
    In: mSystems, Vol. 7, 2022, Nr. 1, e01505-21
    DOI (Open Access)
  • Pinto, Otávio H. B.; Bornemann, Till L. V.; Oliveira, Rafael S.; Frederico, Tayna D.; Quirino, Betania F.; Probst, Alexander J.; de Freitas, Mayanne A. M.; Thompson, Fabiano L.; Kruger, Ricardo H.
    Plume Layer Influences the Amazon Reef Sponge Microbiome Primary Producers
    In: Frontiers in Marine Science, Vol. 9, 2022, 867234
    DOI (Open Access)
  • Hedlund, Brian P; Chuvochina, Maria; Hugenholtz, Philip; Konstantinidis, Konstantinos T; Murray, Alison E; Palmer, Marike; Parks, Donovan H; Probst, Alexander J.; Reysenbach, Anna-Louise; Rodriguez-R, Luis M; Rossello-Mora, Ramon; Sutcliffe, Iain C; Venter, Stephanus N; Whitman, William B
    SeqCode : A nomenclatural code for prokaryotes described from sequence data
    In: Nature Microbiology, Vol. 7, 2022, Nr. 10, pp. 1702 – 1708
    DOI (Open Access)
  • Adam, Panagiotis S.; Bornemann, Till L. V.; Probst, Alexander J.
    Progress and Challenges in Studying the Ecophysiology of Archaea
    In: Archaea: Methods and Protocols / Ferreira-Cerca, Sébastien (Eds.). New York: Springer, 2022, pp. 469 – 486
    DOI
  • Bornemann, Till L. V.; Adam, Panagiotis S.; Probst, Alexander J.
    Reconstruction of Archaeal Genomes from Short-Read Metagenomes
    In: Archaea: Methods and Protocols / Ferreira-Cerca, Sébastien (Eds.). New York: Springer, 2022, pp. 487 – 527
    DOI

    • 2021

  • Heise, Julia; Müller, Hubert; Probst, Alexander J.; Meckenstock, Rainer
    Ammonium Removal in Aquaponics Indicates Participation of Comammox Nitrospira
    In: Current Microbiology, Vol. 78, 2021, Nr. 3, pp. 894 – 903
    DOI (Open Access)
  • Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; Lane, Christopher E.; Papke, R. Thane; Parks, Donovan H.; Rossello-Mora, Ramon; Stott, Matthew B.; Sutcliffe, Iain C.; Thrash, J. Cameron; Venter, Stephanus N.; Whitman, William B.; Acinas, Silvia G.; Amann, Rudolf I.; Anantharaman, Karthik; Armengaud, Jean; Baker, Brett J.; Barco, Roman A.; Bode, Helge B.; Boyd, Eric S.; Brady, Carrie L.; Carini, Paul; Chain, Patrick S. G.; Colman, Daniel R.; DeAngelis, Kristen M.; de los Rios, Maria Asuncion; Estrada-de los Santos, Paulina; Dunlap, Christopher A.; Eisen, Jonathan A.; Emerson, David; Ettema, Thijs J. G.; Eveillard, Damien; Girguis, Peter R.; Hentschel, Ute; Hollibaugh, James T.; Hug, Laura A.; Inskeep, William P.; Ivanova, Elena P.; Klenk, Hans-Peter; Li, Wen-Jun; Lloyd, Karen G.; Löffler, Frank E.; Makhalanyane, Thulani P.; Moser, Duane P.; Nunoura, Takuro; Palmer, Marike; Parro, Victor; Pedrós-Alió, Carlos; Probst, Alexander J.; Smits, Theo H. M.; Steen, Andrew D.; Steenkamp, Emma T.; Spang, Anja; Stewart, Frank J.; Tiedje, James M.; Vandamme, Peter; Wagner, Michael; Wang, Feng-Ping; Yarza, Pablo; Hedlund, Brian P.; Reysenbach, Anna-Louise
    Author Correction: Roadmap for naming uncultivated Archaea and Bacteria
    In: Nature Microbiology, Vol. 6, 2021, Nr. 1, pp. 136
    DOI (Open Access)
  • Hwang, Yunha; Rahlff, Janina; Schulze-Makuch, Dirk; Schloter, Michael; Probst, Alexander J.
    Diverse viruses carrying genes for microbial extremotolerance in the atacama desert hyperarid soil
    In: mSystems, Vol. 6, 2021, Nr. 3, e00385-21
    DOI (Open Access)
  • Yang, Sizhong; Liebner, Susanne; Walz, Josefine; Knoblauch, Christian; Bornemann, Till L. V.; Probst, Alexander J.; Wagner, Dirk; Jetten, Mike S. M.; in ‘t Zandt, Michiel H.
    Effects of a long-term anoxic warming scenario on microbial community structure and functional potential of permafrost-affected soil
    In: Permafrost and Periglacial Processes, Vol. 32, 2021, Nr. 4, pp. 641 – 656
    DOI (Open Access)
  • Probst, Alexander
    Eine Reise zum Untergrund der Erde : Über die Interaktionen von Mikroorganismen und ihre Infektionen in tiefen Regionen der Erdkruste
    In: Unikate: Berichte aus Forschung und Lehre, 2021, Nr. 56 : "Junge Wilde" - Die nächste Generation, pp. 56 – 65
    DOI, Online Full Text (Open Access)
  • Turzynski, Victoria; Monsees, Indra; Moraru, Cristina; Probst, Alexander J.
    Imaging techniques for detecting prokaryotic viruses in environmental samples
    In: Viruses, Vol. 13, 2021, Nr. 11, 2126
    DOI, Online Full Text (Open Access)
  • Hwang, Yunha; Schulze-Makuch, Dirk; Arens, Felix L.; Saenz, Johan S.; Adam, Panagiotis; Sager, Christof; Bornemann, Till L. V.; Zhao, Weishu; Zhang, Ying; Airo, Alessandro; Schloter, Michael; Probst, Alexander J.
    Leave no stone unturned : individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core
    In: Microbiome, Vol. 9, 2021, Nr. 1, 234
    DOI, Online Full Text (Open Access)
  • Rahlff, Janina; Turzynski, Victoria; Esser, Sarah P.; Monsees, Indra; Bornemann, Till L. V.; Figueroa-Gonzalez, Perla Abigail; Schulz, Frederik; Woyke, Tanja; Klingl, Andreas; Moraru, Cristina; Probst, Alexander J.
    Lytic archaeal viruses infect abundant primary producers in Earth’s crust
    In: Nature Communications, Vol. 12, 2021, Nr. 1, 4642
    DOI, Online Full Text (Open Access)
  • Schulze-Makuch, Dirk; Lipus, Daniel; Arens, Felix L.; Baqué, Mickael; Bornemann, Till; Devere, Jean-Pierre; Flury, Markus; Frösler, Jan; Heinz, Jacob; Hwang, Yunha; Kounaves, Samuel P.; Mangelsdorf, Kai; Meckenstock, Rainer; Pannekens, Mark; Probst, Alexander J.; Sáenz, Johan S.; Schirmack, Janosch; Schloter, Michael; Schmitt-Kopplin, Philippe; Schneider, Beate; Uhl, Jenny; Vestergaard, Gisle; Valenzuela, Bernardita; Zamorano, Pedro; Wagner, Dirk
    Microbial hotspots in lithic microhabitats inferred from dna fractionation and metagenomics in the atacama desert
    In: Microorganisms, Vol. 9, 2021, Nr. 5, 1038
    DOI (Open Access)
  • Benedek, Tibor; Szentgyörgyi, Flóra; Gergócs, Veronika; Menashe, Ofir; Gonzalez, Perla Abigail Figueroa; Probst, Alexander J.; Kriszt, Balázs; Táncsics, András
    Potential of Variovorax paradoxus isolate BFB1_13 for bioremediation of BTEX contaminated sites
    In: AMB Express, Vol. 11, 2021, Nr. 1, 126
    DOI (Open Access)
  • Starr, Evan P.; Shi, Shengjing; Blazewicz, Steven J.; Koch, Benjamin J.; Probst, Alexander J.; Hungate, Bruce A.; Pett-Ridge, Jennifer; Firestone, Mary K.; Banfield, Jillian F.
    Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil
    In: mSphere, Vol. 6, 2021, Nr. 5, e00085 - 21
    DOI (Open Access)
  • Chaudhari, Narendrakumar M.; Overholt, Will A.; Figueroa-Gonzalez, Perla Abigail; Taubert, Martin; Bornemann, Till L. V.; Probst, Alexander J.; Hölzer, Martin; Marz, Manja; Küsel, Kirsten
    The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers
    In: Environmental Microbiomes, Vol. 16, 2021, Nr. 1, 24
    DOI (Open Access)
  • Kieft, Kristopher; Breister, Adam M.; Huss, Phil; Linz, Alexandra M.; Zanetakos, Elizabeth; Zhou, Zhichao; Rahlff, Janina; Esser, Sarah P.; Probst, Alexander J.; Raman, Srivatsan; Roux, Simon; Anantharaman, Karthik
    Virus-associated organosulfur metabolism in human and environmental systems
    In: Cell Reports, Vol. 36, 2021, Nr. 5, 109471
    DOI (Open Access)
  • Probst, Alexander J.; Klingl, Andreas; Boenigk, Jens; Schlechter, Jana; Wirth, Reinhard; Flemming, Hans-Curt
    Spezielle Physiologie der Prokaryoten
    In: Boenigk, Biologie: Der Begleiter in und durch das Studium / Boenigk, Jens (Eds.). Berlin: Springer, 2021, pp. 547 – 580
    DOI

    • 2020

  • Probst, Alexander J.; Vaishampayan, Parag
    Are we There Yet? Understanding Interplanetary Microbial Hitchhikers using Molecular Methods
    In: Current Issues in Molecular Biology, Vol. 38, 2020, pp. 33 – 52
    DOI (Open Access)
  • Al-Shayeb, Basem; Sachdeva, Rohan; Chen, Lin-Xing; Ward, Fred; Munk, Patrick; Devoto, Audra; Castelle, Cindy J.; Olm, Matthew R.; Bouma-Gregson, Keith; Amano, Yuki; He, Christine; Méheust, Raphaël; Brooks, Brandon; Thomas, Alex; Lavy, Adi; Matheus-Carnevali, Paula; Sun, Christine; Goltsman, Daniela S. A.; Borton, Mikayla A.; Sharrar, Allison; Jaffe, Alexander L.; Nelson, Tara C.; Kantor, Rose; Keren, Ray; Lane, Katherine R.; Farag, Ibrahim F.; Lei, Shufei; Finstad, Kari; Amundson, Ronald; Anantharaman, Karthik; Zhou, Jinglie; Probst, Alexander J.; Power, Mary E.; Tringe, Susannah G.; Li, Wen-Jun; Wrighton, Kelly; Harrison, Sue; Morowitz, Michael; Relman, David A.; Doudna, Jennifer A.; Lehours, Anne-Catherine; Warren, Lesley; Cate, Jamie H. D.; Santini, Joanne M.; Banfield, Jillian F.
    Clades of huge phages from across Earth’s ecosystems
    In: Nature, Vol. 578, 2020, Nr. 7795, pp. 425 – 431
    DOI (Open Access)
  • Lang, Annemarie; Czech, Laura; Probst, Alexander J.
    Die Leiden der jungen Wissenschaftler
    In: Biospektrum, Vol. 26, 2020, Nr. 5, pp. 572 – 576
    DOI
  • Geesink, Patricia; Wegner, Carl-Eric; Probst, Alexander J.; Herrmann, Martina; Dam, Hang T.; Kaster, Anne-Kristin; Küsel, Kirsten
    Genome-inferred spatio-temporal resolution of an uncultivated Roizmanbacterium reveals its ecological preferences in groundwater
    In: Environmental Microbiology, Vol. 22, 2020, Nr. 2, pp. 726 – 737
    DOI (Open Access)
  • Müller, Hubert; Marozava, Sviatlana; Probst, Alexander J.; Meckenstock, Rainer
    Groundwater cable bacteria conserve energy by sulfur disproportionation
    In: ISME Journal, Vol. 14, 2020, Nr. 2, pp. 623 – 634
    DOI (Open Access)
  • Probst, Alexander J.; Elling, Felix J.; Castelle, Cindy J.; Zhu, Qingzeng; Elvert, Marcus; Birarda, Giovanni; Holman, Hoi-Ying N.; Lane, Katherine R.; Ladd, Bethany; Ryan, M. Cathryn; Woyke, Tanja; Hinrichs, Kai-Uwe; Banfield, Jillian F.
    Lipid analysis of CO₂-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
    In: ISME Journal, Vol. 14, 2020, pp. 1547 – 1560
    DOI (Open Access)
  • Révész, Fruzsina; Figueroa-Gonzalez, Perla Abigail; Probst, Alexander J.; Kriszt, Balázs; Banerjee, Sinchan; Szoboszlay, Sándor; Maróti, Gergely; Táncsics, András
    Microaerobic conditions caused the overwhelming dominance of Acinetobacter spp. and the marginalization of Rhodococcus spp. in diesel fuel/crude oil mixture-amended enrichment cultures
    In: Archives of Microbiology, Vol. 202, 2020, Nr. 2, pp. 329 – 342
    DOI (Open Access)
  • Rahlff, Janina; Giebel, Helge-Ansgar; Stolle, Christian; Wurl, Oliver; Probst, Alexander J.; Herlemann, Daniel P. R.
    Overlooked diversity of ultramicrobacterial minorities at the air-sea interface
    In: Atmosphere, Vol. 11, 2020, Nr. 11, pp. 1214
    DOI, Online Full Text (Open Access)
  • Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; Lane, Christopher E.; Papke, R. Thane; Parks, Donovan H.; Rossello-Mora, Ramon; Stott, Matthew B.; Sutcliffe, Iain C.; Thrash, J. Cameron; Venter, Stephanus N.; Whitman, William B.; Acinas, Silvia G.; Amann, Rudolf I.; Anantharaman, Karthik; Armengaud, Jean; Baker, Brett J.; Barco, Roman A.; Bode, Helge B.; Boyd, Eric S.; Brady, Carrie L.; Carini, Paul; Chain, Patrick S. G.; Colman, Daniel R.; DeAngelis, Kristen M.; de los Rios, Maria Asuncion; Estrada-de los Santos, Paulina; Dunlap, Christopher A.; Eisen, Jonathan A.; Emerson, David; Ettema, Thijs J. G.; Eveillard, Damien; Girguis, Peter R.; Hentschel, Ute; Hollibaugh, James T.; Hug, Laura A.; Inskeep, William P.; Ivanova, Elena P.; Klenk, Hans-Peter; Li, Wen-Jun; Lloyd, Karen G.; Löffler, Frank E.; Makhalanyane, Thulani P.; Moser, Duane P.; Nunoura, Takuro; Palmer, Marike; Parro, Victor; Pedrós-Alió, Carlos; Probst, Alexander J.; Smits, Theo H. M.; Steen, Andrew D.; Steenkamp, Emma T.; Spang, Anja; Stewart, Frank J.; Tiedje, James M.; Vandamme, Peter; Wagner, Michael; Wang, Feng-Ping; Hedlund, Brian P.; Reysenbach, Anna-Louise
    Roadmap for naming uncultivated Archaea and Bacteria
    In: Nature Microbiology, Vol. 5, 2020, Nr. 8, pp. 987 – 994
    DOI (Open Access)
  • Figueroa-Gonzalez, Perla Abigail; Bornemann, Till L. V.; Adam, Panagiotis; Plewka, Julia; Révész, Fruzsina; von Hagen, Christian A.; Táncsics, András; Probst, Alexander J.
    Saccharibacteria as Organic Carbon Sinks in Hydrocarbon-Fueled Communities
    In: Frontiers in Microbiology, Vol. 11, 2020, pp. 587782
    DOI, Online Full Text (Open Access)
  • Probst, Alexander J.
    Zusammen in Dunkelheit — mikrobielle Interaktionen in der Erdkruste
    In: Biospektrum, Vol. 26, 2020, Nr. 3, pp. 255 – 258
    DOI, Online Full Text (Open Access)
  • Nuy, Julia; Bornemann, Till; Beisser, Daniela; Probst, Alexander J.; Boenigk, Jens
    Comparing Community Measures in Lake Microbial Ecology: Metagenomes and Metatranscriptomes and Amplicons, oh my!
    2020
    DOI (Open Access)

    • 2019

  • Schwank, Katrin; Bornemann, Till L. V.; Dombrowski, Nina; Spang, Anja; Banfield, Jillian F.; Probst, Alexander J.
    An archaeal symbiont-host association from the deep terrestrial subsurface
    In: ISME Journal, Vol. 13, 2019, pp. 2135 – 2139
    DOI, Online Full Text (Open Access)
  • Bouma-Gregson, Keith; Olm, Matthew R.; Probst, Alexander J.; Anantharaman, Karthik; Power, Mary E.; Banfield, Jillian F.
    Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
    In: ISME Journal, Vol. 13, 2019, Nr. 6, pp. 1618 – 1634
    DOI (Open Access)
  • Monsees, Indra; Klingl, Andreas; Probst, Alexander J.
    Kleine Zellen, große Wirkung — Bakterien der Candidate Phyla Radiation
    In: Biospektrum, Vol. 25, 2019, Nr. 7, pp. 719 – 721
    DOI

    • 2018

  • Marozava, Sviatlana; Mouttaki, Housna; Müller, Hubert; Abu Laban, Nidal; Probst, Alexander J.; Meckenstock, Rainer
    Anaerobic degradation of 1-methylnaphthalene by a member of the Thermoanaerobacteraceae contained in an iron-reducing enrichment culture
    In: Biodegradation, Vol. 29, 2018, Nr. 1, pp. 23 – 39
    DOI (Open Access)
  • Nocker, Andreas; Shah, Mili; Dannenmann, Benjamin; Schulze-Osthoff, Klaus; Wingender, Jost; Probst, Alexander J.
    Assessment of UV-C-induced water disinfection by differential PCR-based quantification of bacterial DNA damage
    In: Journal of Microbiological Methods, Vol. 149, 2018, pp. 89 – 95
    DOI
  • Castelle, Cindy J.; Brown, Christopher T.; Anantharaman, Karthik; Probst, Alexander J.; Huang, Raven H.; Banfield, Jillian F.
    Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations
    In: Nature Reviews Microbiology, Vol. 16, 2018, Nr. 10, pp. 629 – 645
    DOI, Online Full Text (Open Access)
  • Probst, Alexander J.; Ladd, Bethany; Jarett, Jessica K.; Geller-Mcgrath, David E.; Sieber, Christian M. K.; Emerson, Joanne B.; Anantharaman, Karthik; Thomas, Brian C.; Malmstrom, Rex R.; Stieglmeier, Michaela; Klingl, Andreas; Woyke, Tanja; Ryan, M. Cathryn; Banfield, Jillian F.
    Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
    In: Nature Microbiology, Vol. 3, 2018, Nr. 3, pp. 328 – 336
    DOI (Open Access)
  • West, Patrick T.; Probst, Alexander J.; Grigoriev, Igor V.; Thomas, Brian C.; Banfield, Jillian F.
    Genome-reconstruction for eukaryotes from complex natural microbial communities
    In: Genome Research, Vol. 28, 2018, Nr. 4, pp. 569 – 580
    DOI, Online Full Text (Open Access)
  • Probst, Alexander J.; Banfield, Jillian F.
    Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism
    In: Genome Biology and Evolution, Vol. 10, 2018, Nr. 4, pp. 1115 – 1119
    DOI (Open Access)
  • Liu, Xiaobo; Li, Meng; Castelle, Cindy J; Probst, Alexander J.; Zhou, Zhichao; Pan, Jie; Liu, Yang; Banfield, Jillian F; Gu, Ji-Dong
    Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages
    In: Microbiome, Vol. 6, 2018, 102
    DOI (Open Access)
  • Sieber, Christian M.K.; Probst, Alexander J.; Sharrar, Allison; Thomas, Brian C.; Hess, Matthias; Tringe, Susannah G.; Banfield, Jillian F.
    Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
    In: Nature Microbiology, Vol. 3, 2018, Nr. 7, pp. 836 – 843
    DOI (Open Access)
  • Starr, Evan P; Shi, Shengjing; Blazewicz, Steven J; Probst, Alexander J.; Herman, Donald J; Firestone, Mary K; Banfield, Jillian F
    Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon.
    In: Microbiome, Vol. 6, 2018, 122
    DOI (Open Access)
  • Schulze-Makuch, Dirk; Wagner, Dirk; Kounaves, Samuel P.; Mangelsdorf, Kai; Devine, Kevin G.; De Vera, Jean-Pierre; Schmitt-Kopplin, Philippe; Grossart, Hans-Peter; Parro, Victor; Kaupenjohann, Martin; Galy, Albert; Schneider, Beate; Airo, Alessandro; Frösler, Jan; Davila, Alfonso F.; Arens, Felix L.; Cáceres, Luis; Cornejo, Francisco Solís; Carrizo, Daniel; Dartnell, Lewis; DiRuggiero, Jocelyne; Flury, Markus; Ganzert, Lars; Gessner, Mark O.; Grathwohl, Peter; Guan, Lisa; Heinz, Jacob; Hess, Matthias; Keppler, Frank; Maus, Deborah; McKay, Christopher P.; Meckenstock, Rainer; Montgomery, Wren; Oberlin, Elizabeth A.; Probst, Alexander J.; Sáenz, Johan S.; Sattler, Tobias; Schirmack, Janosch; Sephton, Mark A.; Schloter, Michael; Uhl, Jenny; Valenzuela, Bernardita; Vestergaard, Gisle; Wörmer, Lars; Zamorano, Pedro
    Transitory microbial habitat in the hyperarid Atacama Desert
    In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 115, 2018, Nr. 11, pp. 2670 – 2675
    DOI (Open Access)
  • Bouma-Gregson, Keith; Olm, Matthew R.; Probst, Alexander J.; Anantharaman, Karthik; Power, Mary E.; Banfield, Jillian F.
    Microbial diversity and metabolic potential in cyanotoxin producing cyanobacterial mats throughout a river network
    2018
    DOI (Open Access)

    • 2017

  • Probst, Alexander J.; Castelle, Cindy J.; Singh, Andrea; Brown, Christopher T.; Anantharaman, Karthik; Sharon, Itai; Hug, Laura A.; Burstein, David; Emerson, Joanne B.; Thomas, Brian C.; Banfield, Jillian F.
    Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO₂ concentrations
    In: Environmental Microbiology, Vol. 19, 2017, Nr. 2, pp. 459 – 474
    DOI (Open Access)
  • Moissl-Eichinger, Christine; Probst, Alexander J.; Birarda, Giovanni; Auerbach, Anna; Koskinen, Kaisa; Wolf, Peter; Holman, Hoi-Ying N.
    Human age and skin physiology shape diversity and abundance of Archaea on skin
    In: Scientific Reports, Vol. 7, 2017, Nr. 1, 4039
    DOI (Open Access)
  • Finstad, Kari M.; Probst, Alexander J.; Thomas, Brian C.; Andersen, Gary L.; Demergasso, Cecilia; Echeverría, Alex; Amundson, Ronald G.; Banfield, Jillian F.
    Microbial community structure and the persistence of cyanobacterial populations in salt crusts of the hyperarid atacama desert from genome-resolved Metagenomics
    In: Frontiers in Microbiology, Vol. 8, 2017, 1435
    DOI (Open Access)
  • Burstein, David; Harrington, Lucas B.; Strutt, Steven C.; Probst, Alexander J.; Anantharaman, Karthik; Thomas, Brian C.; Doudna, Jennifer A.; Banfield, Jillian F.
    New CRISPR-Cas systems from uncultivated microbes
    In: Nature, Vol. 542, 2017, Nr. 7640, pp. 237 – 241
    DOI (Open Access)
  • Hernsdorf, Alex W.; Amano, Yuki; Miyakawa, Kazuya; Ise, Kotaro; Suzuki, Yohey; Anantharaman, Karthik; Probst, Alexander J.; Burstein, David; Thomas, Brian C.; Banfield, Jillian F.
    Potential for microbial H 2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments
    In: ISME Journal, Vol. 11, 2017, Nr. 8, pp. 1915 – 1929
    DOI (Open Access)
  • Probst, Alexander J.; Hu, Ping; Sun, Christine L.; Dubinsky, Eric A.; Sieber, Christian M. K.; Banfield, Jillian F.; Andersen, Gary L.
    Reply to delmont and eren : strain variants and population structure during the Deepwater Horizon oil spill
    In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 114, 2017, Nr. 43, pp. E8950 – E8952
    DOI, Online Full Text (Open Access)
  • Hu, Ping; Dubinsky, Eric A.; Probst, Alexander J.; Wang, Jian; Sieber, Christian M. K.; Tom, Lauren M.; Gardinali, Piero R.; Banfield, Jillian F.; Atlas, Ronald M.; Andersen, Gary L.
    Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders
    In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 114, 2017, Nr. 28, pp. 7432 – 7437
    DOI (Open Access)
  • Birarda, Giovanni; Probst, Alexander J.; Holman, Hoi-Ying
    Rapid and label-free infrared imaging for microbial community screening and profiling [Patentschrift]
    2017
    Online Full Text

    • 2016

  • Hug, Laura A.; Baker, Brett J.; Anantharaman, Karthik; Brown, Christopher T.; Probst, Alexander J.; Castelle, Cindy J.; Butterfield, Cristina N.; Hernsdorf, Alex W.; Amano, Yuki; Ise, Kotaro; Suzuki, Yohey; Dudek, Natasha; Relman, David A.; Finstad, Kari M.; Amundson, Ronald; Thomas, Brian C.; Banfield, Jillian F.
    A new view of the tree of life
    In: Nature Microbiology, Vol. 1, 2016, Nr. 5, 16048
    DOI (Open Access)
  • Anantharaman, Karthik; Brown, Christopher T.; Burstein, David; Castelle, Cindy J.; Probst, Alexander J.; Thomas, Brian C.; Williams, Kenneth H.; Banfield, Jillian F.
    Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum
    In: PeerJ, Vol. 2016, 2016, Nr. 1, e1607
    DOI (Open Access)
  • Bird, Jordan T.; Baker, Brett J.; Probst, Alexander J.; Podar, Mircea; Lloyd, Karen G.
    Culture independent genomic comparisons reveal environmental adaptations for altiarchaeales
    In: Frontiers in Microbiology, Vol. 7, 2016, 1221
    DOI (Open Access)
  • Weikl, Fabian; Tischer, Christina; Probst, Alexander J.; Heinrich, Joachim; Markevych, Iana; Jochner, Susanne; Pritsch, Karin
    Fungal and bacterial communities in indoor dust follow different environmental determinants
    In: PLoS ONE, Vol. 11, 2016, Nr. 4, e0154131
    DOI (Open Access)
  • Burstein, David; Sun, Christine L.; Brown, Christopher T.; Sharon, Itai; Anantharaman, Karthik; Probst, Alexander J.; Thomas, Brian C.; Banfield, Jillian F.
    Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems
    In: Nature Communications, Vol. 7, 2016, 10613
    DOI (Open Access)
  • Mayer, Teresa; Blachowicz, Adriana; Probst, Alexander J.; Vaishampayan, Parag; Checinska, Aleksandra; Swarmer, Tiffany; Leon, Pablo de; Venkateswaran, Kasthuri
    Microbial succession in an inflated lunar/Mars analog habitat during a 30-day human occupation
    In: Microbiome, Vol. 4, 2016, 22
    DOI (Open Access)
  • Butterfield, Cristina N.; Li, Zhou; Andeer, Peter F.; Spaulding, Susan; Thomas, Brian C.; Singh, Andrea; Hettich, Robert L.; Suttle, Kenwyn B.; Probst, Alexander J.; Tringe, Susannah G.; Northen, Trent; Pan, Chongle; Banfield, Jillian F.
    Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone
    In: PeerJ, Vol. 2016, 2016, Nr. 11, e2687
    DOI (Open Access)
  • Anantharaman, Karthik; Brown, Christopher T.; Hug, Laura A.; Sharon, Itai; Castelle, Cindy J.; Probst, Alexander J.; Thomas, Brian C.; Singh, Andrea; Wilkins, Michael J.; Karaoz, Ulas; Brodie, Eoin L.; Williams, Kenneth H.; Hubbard, Susan S.; Banfield, Jillian F.
    Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
    In: Nature Communications, Vol. 7, 2016, 13219
    DOI (Open Access)
  • Tischer, Christina; Weikl, Fabian; Probst, Alexander J.; Standl, Marie; Heinrich, Joachim; Pritsch, Karin
    Urban dust microbiome : Impact on later atopy and wheezing
    In: Environmental Health Perspectives, Vol. 124, 2016, Nr. 12, pp. 1919 – 1923
    DOI (Open Access)
  • Moissl-Eichinger, Christine; Perras, Alexandra; Probst, Alexander J.
    Microbial nano-tool [Patentschrift]
    2016
    Online Full Text

    • 2015

  • Weinmaier, Thomas; Probst, Alexander J.; La Duc, Myron T.; Ciobanu, Doina; Cheng, Jan-Fang; Ivanova, Natalia; Rattei, Thomas; Vaishampayan, Parag
    A viability-linked metagenomic analysis of cleanroom environments : eukarya, prokaryotes, and viruses
    In: Microbiome, Vol. 3, 2015, Nr. 1
    DOI (Open Access)
  • Miezeiewski, Matthew; Schnaufer, Todd; Muravsky, Michele; Wang, Su; Caro-Aguilar, Ivette; Secore, Susan; Thiriot, David S.; Hsu, Charlie; Rogers, Irene; Desantis, Todd; Kuczynski, Justin; Probst, Alexander J.; Chehoud, Christel; Steger, Rachel; Warrington, Janet; Bodmer, Jean-Luc; Heinrichs, Jon H.
    An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile
    In: ISME Journal, Vol. 9, 2015, Nr. 2, pp. 321 – 332
    DOI (Open Access)
  • Mahnert, Alexander; Vaishampayan, Parag; Probst, Alexander J.; Auerbach, Anna; Moissl-Eichinger, Christine; Venkateswaran, Kasthuri; Berg, Gabriele
    Cleanroom maintenance significantly reduces abundance but not diversity of indoor microbiomes
    In: PLoS ONE, Vol. 10, 2015, Nr. 8, e0134848
    DOI (Open Access)
  • Andrade, Karen; Logemann, Jörn; Heidelberg, Karla B; Emerson, Joanne B; Comolli, Luis R; Hug, Laura A; Probst, Alexander J.; Keillar, Angus; Thomas, Brian C; Miller, Christopher S; Allen, Eric E; Moreau, John W; Brocks, Jochen J; Banfield, Jillian F
    Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem
    In: ISME Journal, Vol. 9, 2015, Nr. 12, pp. 2697 – 2711
    DOI
  • Checinska, Aleksandra; Probst, Alexander J.; Vaishampayan, Parag; White, James R.; Kumar, Deepika; Stepanov, Victor G.; Fox, George E.; Nilsson, Henrik R.; Pierson, Duane L.; Perry, Jay; Venkateswaran, Kasthuri
    Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities
    In: Microbiome, Vol. 3, 2015, Nr. 1
    DOI (Open Access)
  • Probst, Alexander J.
    Neue Archaeen aus der Tiefe setzen Treibhausgas um
    In: Biospektrum, Vol. 21, 2015, Nr. 3, pp. 351
    DOI
  • Probst, Alexander J.; Weinmaier, Thomas; DeSantis, Todd Z.; Santo Domingo, Jorge W.; Ashbolt, Nicholas
    New perspectives on microbial community distortion after whole-genome amplification
    In: PLoS ONE, Vol. 10, 2015, Nr. 5, 0124158
    DOI
  • Moissl-Eichinger, Christine; Auerbach, Anna K.; Probst, Alexander J.; Mahnert, Alexander; Tom, Lauren; Piceno, Yvette; Andersen, Gary L.; Venkateswaran, Kasthuri; Rettberg, Petra; Barczyk, Simon; Pukall, Rüdiger; Berg, Gabriele
    Quo vadis? : Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments
    In: Scientific Reports, Vol. 5, 2015, 9156
    DOI (Open Access)
  • Perras, Alexandra K.; Daum, Bertram; Ziegler, Christine; Takahashi, Lynelle K.; Ahmed, Musahid; Wanner, Gerhard; Klingl, Andreas; Leitinger, Gerd; Kolb-Lenz, Dagmar; Gribaldo, Simonetta; Auerbach, Anna; Mora, Maximilian; Probst, Alexander J.; Bellack, Annett; Moissl-Eichinger, Christine
    S-layers at second glance? : Altiarchaeal grappling hooks (hami) resemble archaeal S-layer proteins in structure and sequence
    In: Frontiers in Microbiology, Vol. 6, 2015, 543
    DOI (Open Access)
  • Probst, Alexander J.; Moissl-Eichinger, Christine
    “Altiarchaeales” : Uncultivated archaea from the subsurface
    In: Life, Vol. 5, 2015, Nr. 2, pp. 1381 – 1395
    DOI (Open Access)

    • 2014

  • Probst, Alexander J.; Weinmaier, Thomas; Raymann, Kasie; Perras, Alexandra; Emerson, Joanne B.; Rattei, Thomas; Wanner, Gerhard; Klingl, Andreas; Berg, Ivan A.; Yoshinaga, Marcos; Viehweger, Bernhard; Hinrichs, Kai-Uwe; Thomas, Brian C.; Meck, Sandra; Auerbach, Anna K.; Heise, Matthias; Schintlmeister, Arno; Schmid, Markus; Wagner, Michael; Gribaldo, Simonetta; Banfield, Jillian F.; Moissl-Eichinger, Christine
    Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface
    In: Nature Communications, Vol. 5, 2014, 5497
    DOI (Open Access)
  • Probst, Alexander J.; Birarda, Giovanni; Holman, Hoi-Ying N.; DeSantis, Todd Z.; Wanner, Gerhard; Andersen, Gary L.; Perras, Alexandra K.; Meck, Sandra; Völkel, Jörg; Bechtel, Hans A.; Wirth, Reinhard; Moissl-Eichinger, Christine
    Coupling genetic and chemical microbiome profiling reveals heterogeneity of archaeome and bacteriome in subsurface biofilms that are dominated by the same archaeal species
    In: PLoS ONE, Vol. 9, 2014, Nr. 6, e99801
    DOI (Open Access)
  • Perras, Alexandra K.; Wanner, Gerhard; Klingl, Andreas; Mora, Maximilian; Auerbach, Anna K.; Heinz, Veronika; Probst, Alexander J.; Huber, Harald; Rachel, Reinhard; Meck, Sandra; Moissl-Eichinger, Christine
    Grappling archaea: Ultrastructural analyses of an uncultivated, cold-loving archaeon, and its biofilm
    In: Frontiers in Microbiology, Vol. 5, 2014, Nr. AUG, 397
    DOI (Open Access)
  • Krebs, Jordan E.; Vaishampayan, Parag; Probst, Alexander J.; Tom, Lauren M.; Marteinsson, Viggó Thór; Andersen, Gary L.; Venkateswaran, Kasthuri
    Microbial Community Structures of Novel Icelandic Hot Spring Systems Revealed by PhyloChip G3 Analysis
    In: Astrobiology, Vol. 14, 2014, Nr. 3, pp. 229 – 240
    DOI (Open Access)
  • Bauermeister, Anja; Mahnert, Alexander; Auerbach, Anna; Böker, Alexander; Flier, Niwin; Weber, Christina; Probst, Alexander J.; Moissl-Eichinger, Christine; Haberer, Klaus
    Quantification of Encapsulated Bioburden in Spacecraft Polymer Materials by Cultivation-Dependent and Molecular Methods
    In: PLoS ONE, Vol. 9, 2014, Nr. 4, e94265
    DOI (Open Access)
  • Probst, Alexander J.; Lum, Pek Yee; John, Bettina; Dubinsky, Eric A.; Piceno, Yvette M.; Tom, Lauren M.; Andersen, Gary L.; He, Zhili; DeSantis, Todd Z.
    Microarray of 16S rRNA Gene Probes for Quantifying Population Differences Across Microbiome Samples
    In: Microarrays: current technology, innovations and applications / He, Zhili (Eds.). Norfolk: Caister Acad. Press, 2014

    • 2013

  • Probst, Alexander J.; Auerbach, Anna K.; Moissl-Eichinger, Christine; Neufeld, Josh (Eds.)
    Archaea on Human Skin
    In: PLoS ONE, Vol. 8, 2013, Nr. 6, pp. e65388
    DOI (Open Access)
  • Moissl-Eichinger, Christine; Pukall, Rüdiger; Probst, Alexander J.; Stieglmeier, Michaela; Schwendner, Petra; Mora, Maximilian; Barczyk, Simon; Bohmeier, Maria; Rettberg, Petra
    Lessons Learned from the Microbial Analysis of the Herschel Spacecraft during Assembly, Integration, and Test Operations
    In: Astrobiology, Vol. 13, 2013, Nr. 12, pp. 1125 – 1139
    DOI
  • Vaishampayan, Parag; Probst, Alexander J.; La Duc, Myron T; Bargoma, Emilee; Benardini, James N; Andersen, Gary L; Venkateswaran, Kasthuri
    New perspectives on viable microbial communities in low-biomass cleanroom environments
    In: ISME Journal, Vol. 7, 2013, Nr. 2, pp. 312 – 324
    DOI (Open Access)
  • Probst, Alexander J.; Holman, Hoi-Ying N; DeSantis, Todd Z; Andersen, Gary L; Birarda, Giovanni; Bechtel, Hans A; Piceno, Yvette M; Sonnleitner, Maria; Venkateswaran, Kasthuri; Moissl-Eichinger, Christine
    Tackling the minority : sulfate-reducing bacteria in an archaea-dominated subsurface biofilm
    In: ISME Journal, Vol. 7, 2013, Nr. 3, pp. 635 – 651
    DOI (Open Access)

    • 2012

  • McDonald, Daniel; Price, Morgan N; Goodrich, Julia; Nawrocki, Eric P; DeSantis, Todd Z; Probst, Alexander J.; Andersen, Gary L; Knight, Rob; Hugenholtz, Philip
    An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
    In: ISME Journal, Vol. 6, 2012, Nr. 3, pp. 610 – 618
    DOI (Open Access)
  • Probst, Alexander J.; Mahnert, Alexander; Weber, Christina; Haberer, Klaus; Moissl-Eichinger, Christine
    Detecting inactivated endospores in fluorescence microscopy using propidium monoazide
    In: International Journal of Astrobiology, Vol. 11, 2012, Nr. 2, pp. 117 – 123
    DOI (Open Access)
  • Weiner, Agnes; Schopf, Simone; Wanner, Gerhard; Probst, Alexander J.; Wirth, Reinhard
    Positive, Neutral and Negative Interactions in Cocultures between Pyrococcus furiosus and Different Methanogenic Archaea
    In: Microbiology Insights, Vol. 5, 2012
    DOI (Open Access)
  • Venkateswaran, K.; LaDuc, MT; Vaishampayan, P.; Osman, S.; Kwan, K.; Bargoma, E.; Probst, Alexander J.; Cooper, M.; Benardini, JN; Spry, JA
    Genetic Inventory Task : Final Report
    Pasadena, 2012
    (JPL Publication ; 12-12)

    • 2011

  • Cooper, Moogega; La Duc, Myron T.; Probst, Alexander J.; Vaishampayan, Parag; Stam, Christina; Benardini, James N.; Piceno, Yvette M.; Andersen, Gary L.; Venkateswaran, Kasthuri
    Comparison of Innovative Molecular Approaches and Standard Spore Assays for Assessment of Surface Cleanliness
    In: Applied and Environmental Microbiology, Vol. 77, 2011, Nr. 15, pp. 5438 – 5444
    DOI (Open Access)
  • Probst, Alexander J.; Facius, Rainer; Wirth, Reinhard; Wolf, Marco; Moissl-Eichinger, Christine
    Recovery of Bacillus Spore Contaminants from Rough Surfaces : a Challenge to Space Mission Cleanliness Control
    In: Applied and Environmental Microbiology, Vol. 77, 2011, Nr. 5, pp. 1628 – 1637
    DOI (Open Access)
  • Wirth, Reinhard; Bellack, Annett; Bertl, Markus; Bilek, Yvonne; Heimerl, Thomas; Herzog, Bastian; Leisner, Madeleine; Probst, Alexander J.; Rachel, Reinhard; Sarbu, Christina; Schopf, Simone; Wanner, Gerhard
    The Mode of Cell Wall Growth in Selected Archaea Is Similar to the General Mode of Cell Wall Growth in Bacteria as Revealed by Fluorescent Dye Analysis
    In: Applied and Environmental Microbiology, Vol. 77, 2011, Nr. 5, pp. 1556 – 1562
    DOI (Open Access)

    • 2010

  • Vaishampayan, Parag; Probst, Alexander J.; Krishnamurthi, Srinivasan; Ghosh, Sudeshna; Osman, Shariff; McDowall, Alasdair; Ruckmani, Arunachalam; Mayilraj, Shanmugam; Venkateswaran, Kasthuri
    Bacillus horneckiae sp. nov., isolated from a spacecraft-assembly clean room
    In: International Journal of Systematic and Evolutionary Microbiology (IJSEM), Vol. 60, 2010, Nr. 5, pp. 1031 – 1037
    DOI (Open Access)
  • Hazen, Terry C.; Dubinsky, Eric A.; DeSantis, Todd Z.; Andersen, Gary L.; Piceno, Yvette M.; Singh, Navjeet; Jansson, Janet K.; Probst, Alexander J.; Borglin, Sharon E.; Fortney, Julian L.; Stringfellow, William T.; Bill, Markus; Conrad, Mark E.; Tom, Lauren M.; Chavarria, Krystle L.; Alusi, Thana R.; Lamendella, Regina; Joyner, Dominique C.; Spier, Chelsea; Baelum, Jacob; Auer, Manfred; Zemla, Marcin L.; Chakraborty, Romy; Sonnenthal, Eric L.; D'Haeseleer, Patrik; Holman, Hoi-Ying N.; Osman, Shariff; Lu, Zhenmei; Van Nostrand, Joy D.; Deng, Ye; Zhou, Jizhong; Mason, Olivia U.; D’haeseleer, Patrik
    Deep-sea oil plume enriches indigenous oil-degrading bacteria
    In: Science, Vol. 330, 2010, Nr. 6001, pp. 204 – 208
    DOI (Open Access)
  • Probst, Alexander J.; Vaishampayan, Parag; Osman, Shariff; Moissl-Eichinger, Christine; Andersen, Gary L.; Venkateswaran, Kasthuri
    Diversity of Anaerobic Microbes in Spacecraft Assembly Clean Rooms
    In: Applied and Environmental Microbiology, Vol. 76, 2010, Nr. 9, pp. 2837 – 2845
    DOI (Open Access)
  • Venkateswaran, Kasthuri J.; Probst, Alexander J.; Vaishampayan, Parang A.; Ghosh, Sudeshna; Osman, Shariff
    Isolation of Resistance-Bearing Microorganisms
    In: NASA Tech Briefs: Engineering Solutions for Design & Manufacturing, 2010
    Online Full Text
  • Probst, Alexander J.; Facius, Rainer; Wirth, Reinhard; Moissl-Eichinger, Christine
    Validation of a Nylon-Flocked-Swab Protocol for Efficient Recovery of Bacterial Spores from Smooth and Rough Surfaces
    In: Applied and Environmental Microbiology, Vol. 76, 2010, Nr. 15, pp. 5148 – 5158
    DOI (Open Access)