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Patents
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Activity-based proteomics uncovers suppressed hydrolases and a neo-functionalised antibacterial enzyme at the plant–pathogen interfaceIn: New Phytologist (2023) in pressISSN: 1469-8137; 0028-646XOnline Full Text: dx.doi.org/ (Open Access)
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Chemoproteomics Reveals the Pan-HER Kinase Inhibitor Neratinib To Target an Arabidopsis Epoxide Hydrolase Related to Phytohormone SignalingIn: ACS Chemical Biology Vol. 18 (2023) Nr. 5, pp. 1076 - 1088ISSN: 1554-8937; 1554-8929Online Full Text: dx.doi.org/
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Clp-targeting BacPROTACs impair mycobacterial proteostasis and survivalIn: Cell Vol. 186 (2023) Nr. 10, pp. 2176 - 2192.e22ISSN: 0092-8674; 1097-4172Online Full Text: dx.doi.org/ (Open Access)
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Facile Multicomponent Synthesis of Oxazolidinones from Primary Amines and Cesium (Hydrogen)CarbonateIn: European Journal of Organic Chemistry Vol. 26 (2023) Nr. 27,ISSN: 1099-0690; 0075-4617; 0170-2041; 0365-5490; 0947-3440; 1434-193X; 1434-243XOnline Full Text: dx.doi.org/ (Open Access)
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The UBX domain in UBXD1 organizes ubiquitin binding at the C-terminus of the VCP/p97 AAA-ATPaseIn: Nature Communications Vol. 14 (2023) Nr. 1,ISSN: 2041-1723Online Full Text: dx.doi.org/ (Open Access)
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The root pathogen Aphanomyces euteiches secretes modular proteases in pea apoplast during host infectionIn: Frontiers in Plant Science (FPLS) Vol. 14 (2023)ISSN: 1664-462XOnline Full Text: dx.doi.org/ (Open Access)
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10q26 – The enigma in age-related macular degenerationIn: Progress in Retinal and Eye Research (2022) in pressISSN: 1873-1635; 1350-9462Online Full Text: dx.doi.org/ (Open Access)
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Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1EIn: Frontiers in Microbiology Vol. 12 (2022)ISSN: 1664-302XOnline Full Text: dx.doi.org/ Online Full Text (Open Access)
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BacPROTACs mediate targeted protein degradation in bacteriaIn: Cell Vol. 185 (2022) Nr. 13, pp. 2338 - 2353.e18ISSN: 0092-8674; 1097-4172Online Full Text: dx.doi.org/ (Open Access)
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Chemoproteomics‐Enabled Identification of 4‐Oxo‐β‐Lactams as Inhibitors of Dipeptidyl Peptidases 8 and 9In: Angewandte Chemie International Edition Vol. 61 (2022) Nr. 47,ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/ (Open Access)
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Erratum: Author Correction: Identification of fungal lignocellulose-degrading biocatalysts secreted by Phanerochaete chrysosporium via activity-based protein profiling (Communications biology (2022) 5 1 (1254))In: Communications Biology Vol. 5 (2022) Nr. 1, pp. 1319ISSN: 2399-3642Online Full Text: dx.doi.org/ (Open Access)
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Identification of fungal lignocellulose-degrading biocatalysts secreted by Phanerochaete chrysosporium via activity-based protein profilingIn: Communications Biology Vol. 5 (2022) Nr. 1,ISSN: 2399-3642Online Full Text: dx.doi.org/ (Open Access)
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Persister state-directed transitioning and vulnerability in melanomaIn: Nature Communications Vol. 13 (2022) Nr. 1,ISSN: 2041-1723Online Full Text: dx.doi.org/ (Open Access)
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Article leaf apoplast of field-grown potato analyzed by quantitative proteomics and activity-based protein profilingIn: International Journal of Molecular Sciences (IJMS) Vol. 22 (2021) Nr. 21,ISSN: 1422-0067; 1661-6596Online Full Text: dx.doi.org/ (Open Access)
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Correction to : Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteriaIn: Applied Microbiology and Biotechnology Vol. 105 (2021) Nr. 14-15, pp. 6119 - 6119ISSN: 1432-0614; 0175-7598; 0171-1741; 0340-2118Online Full Text: dx.doi.org/ (Open Access)
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Statins affect cancer cell plasticity with distinct consequences for tumor progression and metastasisIn: Cell Reports Vol. 37 (2021) Nr. 8,ISSN: 2211-1247Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Targeted substrate loop insertion by VCP/p97 during PP1 complex disassemblyIn: Nature Structural & Molecular Biology Vol. 28 (2021) Nr. 12, pp. 964 - 971ISSN: 1545-9993; 1545-9985Online Full Text: dx.doi.org/
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The chemical compound ‘Heatin’ stimulates hypocotyl elongation and interferes with the Arabidopsis NIT1-subfamily of nitrilasesIn: The Plant Journal Vol. 106 (2021) Nr. 6, pp. 1523 - 1540ISSN: 1365-313X; 0960-7412Online Full Text: dx.doi.org/ (Open Access)
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Accelerated trypsin autolysis by affinity polymer templatesIn: RSC Advances Vol. 10 (2020) Nr. 48, pp. 28711 - 28719ISSN: 2046-2069Online Full Text: dx.doi.org/ (Open Access)
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Accelerated trypsin autolysis by affinity polymer templatesIn: RSC Advances Vol. 10 (2020) Nr. 48, pp. 28711 - 28719ISSN: 2046-2069Online Full Text: dx.doi.org/ (Open Access)
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Activation by substoichiometric inhibitionIn: Proceedings of the National Academy of Sciences of the United States of America Vol. 117 (2020) Nr. 3, pp. 1414 - 1418ISSN: 1091-6490; 0027-8424Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Discovering the RNA-binding proteome of plant leaves with an improved RNA interactome capture methodIn: Biomolecules Vol. 10 (2020) Nr. 4,ISSN: 2218-273XOnline Full Text: dx.doi.org/ (Open Access)
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From dolastatin 13 to cyanopeptolins, micropeptins, and lyngbyastatins : the chemical biology of Ahp-cyclodepsipeptidesIn: Natural Product Reports Vol. 37 (2020) Nr. 2, pp. 163 - 174ISSN: 0265-0568; 1460-4752Online Full Text: dx.doi.org/
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Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteriaIn: Applied Microbiology and Biotechnology Vol. 104 (2020) Nr. 13, pp. 5985 - 5998ISSN: 1432-0614; 0175-7598; 0171-1741; 0340-2118Online Full Text: dx.doi.org/ (Open Access)
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Protein Phosphatase-1 Complex Disassembly by p97 is Initiated through Multivalent Recognition of Catalytic and Regulatory Subunits by the p97 SEP-domain AdaptersIn: Journal of Molecular Biology (JMB) Vol. 432 (2020) Nr. 23, pp. 6061 - 6074ISSN: 1089-8638; 0022-2836Online Full Text: dx.doi.org/
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Structure-based evolution of a promiscuous inhibitor to a selective stabilizer of protein–protein interactionsIn: Nature Communications Vol. 11 (2020) Nr. 1, pp. 3954ISSN: 2041-1723Online Full Text: dx.doi.org/ (Open Access)
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Targeting of parvulin interactors by diazirine mediated cross-linking discloses a cellular role of human Par14/17 in actin polymerizationIn: Biological Chemistry Vol. 401 (2020) Nr. 8, pp. 955 - 968ISSN: 1437-4315; 1431-6730Online Full Text: dx.doi.org/ (Open Access)
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Using proteomics for an insight into the performance of activated sludge in a lab-scale WWTPIn: International Biodeterioration & Biodegradation Vol. 149 (2020) pp. 104934ISSN: 0964-8305Online Full Text: dx.doi.org/
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Zelkovamycin is an OXPHOS Inhibitory Member of the Argyrin Natural Product FamilyIn: Chemistry - A European Journal Vol. 26 (2020) Nr. 39, pp. 8524 - 8531ISSN: 0947-6539; 1521-3765Online Full Text: dx.doi.org/ (Open Access)
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A homology-guided, genome-based proteome for improved proteomics in the alloploid Nicotiana benthamianaIn: BMC Genomics Vol. 20 (2019) Nr. 1, pp. 722ISSN: 1471-2164Online Full Text: dx.doi.org/ (Open Access)
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Activity-based proteomics reveals nine target proteases for the recombinant protein-stabilizing inhibitor S/CYS8 in Nicotiana benthamianaIn: Plant Biotechnology Journal Vol. 17 (2019) Nr. 8, pp. 1670 - 1678ISSN: 1467-7652; 1467-7644Online Full Text: dx.doi.org/ (Open Access)
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Cathepsin L regulates metabolic networks controlling rapid cell growth and proliferationIn: Molecular and Cellular Proteomics (MCP) Vol. 18 (2019) Nr. 7, pp. 1330 - 1344ISSN: 1535-9484; 1535-9476Online Full Text: dx.doi.org/ (Open Access)
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Cathepsins Drive Anti-Inflammatory Activity by Regulating Autophagy and Mitochondrial Dynamics in Macrophage Foam CellsIn: Cellular Physiology and Biochemistry Vol. 53 (2019) Nr. 3, pp. 550 - 572ISSN: 1015-8987; 1421-9778Online Full Text: dx.doi.org/ (Open Access)
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Chemical Validation of DegS As a Target for the Development of Antibiotics with a Novel Mode of ActionIn: ChemMedChem Vol. 14 (2019) Nr. 11, pp. 1074 - 1078ISSN: 1860-7187; 1860-7179Online Full Text: dx.doi.org/
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Dynamic hydrolase labelling as a marker for seed quality in Arabidopsis seedsIn: The Biochemical Journal Vol. 476 (2019) Nr. 5, pp. 843 - 857ISSN: 1470-8728Online Full Text: dx.doi.org/ (Open Access)
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Glycosidase and glycan polymorphism control hydrolytic release of immunogenic flagellin peptidesIn: Science Vol. 364 (2019) Nr. 6436,ISSN: 1095-9203; 0036-8075Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradationIn: Environmental Microbiology Vol. 21 (2019) Nr. 4, pp. 1267 - 1286ISSN: 1462-2912; 1462-2920Online Full Text: dx.doi.org/ (Open Access)
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Plant chemical genetics reveals colistin sulphate as a SA and NPR1-independent PR1 inducer functioning via a p38-like kinase pathwayIn: Scientific Reports Vol. 9 (2019) Nr. 1, pp. 11196ISSN: 2045-2322Online Full Text: dx.doi.org/ (Open Access)
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Proteases underground : Analysis of the maize root apoplast identifies organ specific papain-like cysteine protease activityIn: Frontiers in Plant Science (FPLS) Vol. 10 (2019)ISSN: 1664-462XOnline Full Text: dx.doi.org/ (Open Access)
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Triazine probes target ascorbate peroxidases in plantsIn: Plant Physiology Vol. 180 (2019) Nr. 4, pp. 1848 - 1859ISSN: 1532-2548; 0032-0889Online Full Text: dx.doi.org/ (Open Access)
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A Non-Competitive Inhibitor of VCP/p97 and VPS4 Reveals Conserved Allosteric Circuits in Type I and II AAA ATPasesIn: Angewandte Chemie International Edition Vol. 57 (2018) Nr. 6, pp. 1576 - 1580ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/
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An apoplastic peptide activates salicylic acid signalling in maizeIn: Nature Plants Vol. 4 (2018) Nr. 3, pp. 172 - 180ISSN: 2055-0278; 2055-026XOnline Full Text: dx.doi.org/ Online Full Text (Open Access)
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Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitatsIn: ISME Journal Vol. 12 (2018) Nr. 8, pp. 2039 - 2050ISSN: 1751-7370; 1751-7362Online Full Text: dx.doi.org/ (Open Access)
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HTRA1-Dependent Cell Cycle ProteomicsIn: Journal of Proteome Research Vol. 17 (2018) Nr. 8, pp. 2679 - 2694ISSN: 1535-3907; 1535-3893Online Full Text: dx.doi.org/
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Identification of Noncatalytic Lysine Residues from Allosteric Circuits via Covalent ProbesIn: ACS Chemical Biology Vol. 13 (2018) Nr. 5, pp. 1307 - 1312ISSN: 1554-8937; 1554-8929Online Full Text: dx.doi.org/
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Identification of the Natural Product RotihibinA as a TOR Kinase Signaling Inhibitor by Unbiased Transcriptional ProfilingIn: Chemistry - A European Journal Vol. 24 (2018) Nr. 48, pp. 12500 - 12504ISSN: 0947-6539; 1521-3765Online Full Text: dx.doi.org/
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Low Protease Content in Medicago truncatula Cell Cultures Facilitates Recombinant Protein ProductionIn: Biotechnology Journal Vol. 13 (2018) Nr. 7,ISSN: 1860-7314; 1860-6768Online Full Text: dx.doi.org/
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Mono- and Bivalent 14-3-3 Inhibitors for Characterizing Supramolecular “Lysine Wrapping” of Oligoethylene Glycol (OEG) Moieties in ProteinsIn: Chemistry - A European Journal (2018)ISSN: 0947-6539; 1521-3765Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Multiplex Fluorescent, Activity-Based Protein Profiling Identifies Active α-Glycosidases and Other Hydrolases in PlantsIn: Plant Physiology Vol. 177 (2018) Nr. 1, pp. 24 - 37ISSN: 1532-2548; 0032-0889Online Full Text: dx.doi.org/ (Open Access)
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Protease Activities Triggered by Ralstonia solanacearum Infection in Susceptible and Tolerant Tomato LinesIn: Molecular and Cellular Proteomics (MCP) Vol. 17 (2018) Nr. 6, pp. 1112 - 1125ISSN: 1535-9484; 1535-9476Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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The transcriptome, extracellular proteome and active secretome of agroinfiltrated Nicotiana benthamiana uncover a large, diverse protease repertoireIn: Plant Biotechnology Journal Vol. 16 (2018) Nr. 5, pp. 1068 - 1084ISSN: 1467-7652; 1467-7644Online Full Text: dx.doi.org/ (Open Access)
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Three unrelated protease inhibitors enhance accumulation of pharmaceutical recombinant proteins in Nicotiana benthamianaIn: Plant Biotechnology Journal Vol. 16 (2018) Nr. 10, pp. 1797 - 1810ISSN: 1467-7652; 1467-7644Online Full Text: dx.doi.org/ (Open Access)
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Ubiquitin-Independent Disassembly by a p97 AAA-ATPase Complex Drives PP1 Holoenzyme FormationIn: Molecular Cell Vol. 72 (2018) Nr. 4, pp. 766 - 777ISSN: 1097-2765; 1097-4164Online Full Text: dx.doi.org/ (Open Access)
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Utilities for Mass Spectrometry Analysis of Proteins (UMSAP) : Fast post-processing of mass spectrometry dataIn: Rapid Communications in Mass Spectrometry Vol. 32 (2018) Nr. 19, pp. 1659 - 1667ISSN: 1097-0231; 0951-4198Online Full Text: dx.doi.org/
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Activity-based protein profiling as a robust method for enzyme identification and screening in extremophilic ArchaeaIn: Nature Communications Vol. 8 (2017) pp. 15352ISSN: 2041-1723Online Full Text: dx.doi.org/ (Open Access)
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Mesenchymal stem cell therapy protects lungs from radiation-induced endothelial cell loss by restoring superoxide dismutase 1 expressionIn: Antioxidants and Redox Signaling Vol. 26 (2017) Nr. 11, pp. 563 - 582ISSN: 1523-0864; 1557-7716Online Full Text: dx.doi.org/ (Open Access)
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Proteasome activity profiling uncovers alteration of catalytic β2 and β5 subunits of the stress-induced proteasome during salinity stress in tomato rootsIn: Frontiers in Plant Science (FPLS) Vol. 8 (2017)ISSN: 1664-462XOnline Full Text: dx.doi.org/ (Open Access)
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Quantitative proteomics reveals ecophysiological effects of light and silver stress on the mixotrophic protist Poterioochromonas malhamensisIn: PLoS ONE Vol. 12 (2017) Nr. 1, pp. e0168183ISSN: 1932-6203Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Small Molecules from Deep within the GutIn: ChemBioChem Vol. 18 (2017) Nr. 11, pp. 967 - 968ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/
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Subunit-selective proteasome activity profiling uncovers uncoupled proteasome subunit activities during bacterial infectionsIn: The Plant Journal Vol. 90 (2017) Nr. 2, pp. 418 - 430ISSN: 1365-313X; 0960-7412Online Full Text: dx.doi.org/
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Tailored Ahp-cyclodepsipeptides as Potent Non-covalent Serine Protease InhibitorsIn: Angewandte Chemie International Edition Vol. 56 (2017) Nr. 29, Special Issue: 100th Anniversary of the Royal Australian Chemical Institute, pp. 8555 - 8558ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/
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The Root Growth-Regulating Brevicompanine Natural Products Modulate the Plant Circadian ClockIn: ACS Chemical Biology Vol. 12 (2017) Nr. 6, pp. 1466 - 1471ISSN: 1554-8937; 1554-8929Online Full Text: dx.doi.org/ (Open Access)
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Turning-ON ProteasomesIn: Cell Chemical Biology Vol. 24 (2017) Nr. 6, pp. 653 - 655ISSN: 2451-9456Online Full Text: dx.doi.org/
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A novel quenched fluorescent activity-based probe reveals caspase-3 activity in the endoplasmic reticulum during apoptosisIn: Chemical Science Vol. 7 (2016) pp. 1322 - 1337ISSN: 2041-6539; 2041-6520Online Full Text: dx.doi.org/ (Open Access)
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Capture of endogenously biotinylated proteins from Pseudomonas aeruginosa displays unexpected downregulation of LiuD upon iron nutritionIn: Bioorganic and Medicinal Chemistry Vol. 24 (2016) Nr. 15, pp. 3330 - 3335ISSN: 1464-3391; 0968-0896Online Full Text: dx.doi.org/
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VCP/p97 Extracts Sterically Trapped Ku70/80 Rings from DNA in Double-Strand Break RepairIn: Molecular Cell Vol. 64 (2016) Nr. 1, pp. 189 - 198ISSN: 1097-2765; 1097-4164Online Full Text: dx.doi.org/ (Open Access)
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Chemical proteomics versus LeishmaniasisIn: Chemistry and Biology Vol. 22 (2015) Nr. 3, pp. 309 - 310ISSN: 1879-1301; 1074-5521Online Full Text: dx.doi.org/ (Open Access)
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Chemoproteomic Evaluation of the Polyacetylene Callyspongynic AcidIn: Chemistry - A European Journal Vol. 21 (2015) Nr. 30, pp. 10721 - 10728ISSN: 0947-6539; 1521-3765Online Full Text: dx.doi.org/ (Open Access)
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Determinants of amyloid fibril degradation by the PDZ protease HTRA1In: Nature Chemical Biology Vol. 11 (2015) Nr. 11, pp. 862 - 869ISSN: 1552-4450; 1552-4469Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Functional divergence of two secreted immune proteases of tomatoIn: Current Biology Vol. 25 (2015) Nr. 17, pp. 2300 - 2306ISSN: 1879-0445; 0960-9822Online Full Text: dx.doi.org/ (Open Access)
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Identification of human telomerase assembly inhibitors enabled by a novel method to produce hTERTIn: Nucleic Acids Research Vol. 43 (2015) Nr. 15, art. no. e99ISSN: 1362-4962; 0301-5610; 0305-1048Online Full Text: dx.doi.org/ (Open Access)
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Subfamily-specific fluorescent probes for cysteine proteases display dynamic protease activities during seed germinationIn: Plant Physiology Vol. 168 (2015) Nr. 4, pp. 1462 - 1475ISSN: 0032-0889Online Full Text: dx.doi.org/
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Synthesis of a hexahydropyrrolo indole (HPI) compound libraryIn: Bioorganic and Medicinal Chemistry Vol. 23 (2015) Nr. 11, pp. 2636 - 2645ISSN: 1464-3391; 0968-0896Online Full Text: dx.doi.org/
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A chemical inhibitor of jasmonate signaling targets JAR1 in Arabidopsis thalianaIn: Nature Chemical Biology Vol. 10 (2014) Nr. 10, pp. 830 - 836ISSN: 1552-4469Online Full Text: dx.doi.org/
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Building up a chemical proteomics network in Europe and beyondIn: ACS Chemical Biology Vol. 9 (2014) Nr. 8, pp. 1647 - 1648ISSN: 1554-8937; 1554-8929Online Full Text: dx.doi.org/
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Peptidyl succinimidyl peptides as taspase 1 inhibitorsIn: ChemBioChem Vol. 15 (2014) Nr. 15, pp. 2233 - 2237ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/
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Synthesis of the B-seco limonoid core scaffoldIn: Beilstein Journal of Organic Chemistry Vol. 10 (2014) pp. 194 - 208ISSN: 1860-5397; 2195-951XOnline Full Text: dx.doi.org/ (Open Access)
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A substrate-inspired probe monitors translocation, activation, and subcellular targeting of bacterial type III effector protease AvrPphBIn: Chemistry and Biology Vol. 20 (2013) Nr. 2, pp. 168 - 176ISSN: 1879-1301; 1074-5521Online Full Text: dx.doi.org/
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Ahp cyclodepsipeptides: The impact of the ahp residue on the "Canonical Inhibition" of S1 serine proteasesIn: ChemBioChem Vol. 14 (2013) Nr. 11, pp. 1301 - 1308ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/
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Case studies of the synthesis of bioactive cyclodepsipeptide natural productsIn: Molecules: A Journal of Synthetic Chemistry and Natural Product Chemistry Vol. 18 (2013) Nr. 2, pp. 1337 - 1367ISSN: 1420-3049Online Full Text: dx.doi.org/ (Open Access)
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Chemical proteomics with sulfonyl fluoride probes reveals selective labeling of functional tyrosines in glutathione transferasesIn: Chemistry and Biology Vol. 20 (2013) Nr. 4, pp. 541 - 548ISSN: 1879-1301; 1074-5521Online Full Text: dx.doi.org/ (Open Access)
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Diversity of allosteric regulation in proteasesIn: ACS Chemical Biology Vol. 8 (2013) Nr. 1, pp. 19 - 26ISSN: 1554-8937; 1554-8929Online Full Text: dx.doi.org/
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Profiling protein kinases and other ATP binding proteins in arabidopsis using acyl-ATP probesIn: Molecular and Cellular Proteomics (MCP) Vol. 12 (2013) Nr. 9, pp. 2481 - 2496ISSN: 1535-9484; 1535-9476Online Full Text: dx.doi.org/
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Pseudomonas syringae pv. syringae Uses Proteasome Inhibitor Syringolin A to Colonize from Wound Infection SitesIn: PLoS Pathogens Vol. 9 (2013) Nr. 3, pp. e1003281ISSN: 1553-7374; 1553-7366Online Full Text: dx.doi.org/ (Open Access)
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Streamlining chemical probe discovery : libraries of "fully functionalized" small molecules for phenotypic screeningIn: Angewandte Chemie International Edition Vol. 52 (2013) Nr. 5, pp. 1368 - 1370ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/
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A para-nitrophenol phosphonate probe labels distinct serine hydrolases of ArabidopsisIn: Bioorganic and Medicinal Chemistry Vol. 20 (2012) Nr. 2, pp. 601 - 606ISSN: 1464-3391; 0968-0896Online Full Text: dx.doi.org/
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Activity enhancement of the synthetic syrbactin proteasome inhibitor hybrid and biological evaluation in tumor cellsIn: Biochemistry Vol. 51 (2012) Nr. 34, pp. 6880 - 6888ISSN: 1520-4995; 0006-2960Online Full Text: dx.doi.org/
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Allosteric inhibition of Taspase1's pathobiological activity by enforced dimerization in vivoIn: The FASEB Journal Vol. 26 (2012) Nr. 8, pp. 3421 - 3429ISSN: 0892-6638; 1530-6860Online Full Text: dx.doi.org/
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Challenges in the syntheses of peptidic natural productsIn: Synthesis: Journal of Synthetic Organic Chemistry Vol. 44 (2012) Nr. 12, pp. 1755 - 1777ISSN: 0039-7881; 1437-210XOnline Full Text: dx.doi.org/
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Chemical Biology Approaches Reveal Conserved Features of a C-Terminal Processing PDZ ProteaseIn: ChemBioChem Vol. 13 (2012) Nr. 3, pp. 402 - 408ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/
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Development of a Solid-Phase Approach to the Natural Product Class of Ahp-Containing CyclodepsipeptidesIn: European Journal of Organic Chemistry (2012) Nr. 8, pp. 1616 - 1625ISSN: 1099-0690; 0075-4617; 0170-2041; 0365-5490; 0947-3440; 1434-193X; 1434-243XOnline Full Text: dx.doi.org/
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Discovery of a potent and highly β1 specific proteasome inhibitor from a focused library of urea-containing peptide vinyl sulfones and peptide epoxyketonesIn: Organic and Biomolecular Chemistry Vol. 10 (2012) Nr. 1, pp. 181 - 194ISSN: 1477-0539; 1477-0520Online Full Text: dx.doi.org/
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E. coli LoiP (YggG), a metalloprotease hydrolyzing Phe–Phe bondsIn: Molecular BioSystems Vol. 8 (2012) Nr. 6, pp. 1775 - 1782ISSN: 1742-206X; 1742-2051Online Full Text: dx.doi.org/ Online Full Text
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Human high temperature requirement serine protease A1 (HTRA1) degrades tau protein aggregatesIn: The Journal of Biological Chemistry (JBC) Vol. 287 (2012) Nr. 25, pp. 20931 - 20941ISSN: 0021-9258; 1083-351XOnline Full Text: dx.doi.org/
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Identification of a selective, activity-based probe for glyceraldehyde 3-phosphate dehydrogenasesIn: Angewandte Chemie International Edition Vol. 51 (2012) Nr. 21, pp. 5230 - 5233ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/
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In Silico Identification of an Interferon InhibitorIn: ChemMedChem Vol. 7 (2012) Nr. 4, pp. 555 - 557ISSN: 1860-7187; 1860-7179Online Full Text: dx.doi.org/
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One-shot NMR analysis of microbial secretions identifies highly potent proteasome inhibitorIn: Proceedings of the National Academy of Sciences of the United States of America (PNAS) Vol. 109 (2012) Nr. 45, pp. 18367 - 18371ISSN: 1091-6490; 0027-8424Online Full Text: dx.doi.org/
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Probes for activity-based profiling of plant proteasesIn: Physiologia Plantarum Vol. 145 (2012) Nr. 1, Special Issue: Plant Proteases, pp. 18 - 27ISSN: 0031-9317; 1399-3054Online Full Text: dx.doi.org/
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Selective inhibition of plant serine hydrolases by agrochemicals revealed by competitive ABPPIn: Bioorganic and Medicinal Chemistry Vol. 20 (2012) Nr. 2, pp. 597 - 600ISSN: 1464-3391; 0968-0896Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Small-molecule stabilization of protein-protein interactions : An underestimated concept in drug discovery?In: Angewandte Chemie International Edition Vol. 51 (2012) Nr. 9, pp. 2012 - 2018ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/
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Sulfonyl Fluoride Analogues as Activity-Based Probes for Serine ProteasesIn: ChemBioChem Vol. 13 (2012) Nr. 16, pp. 2327 - 2330ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/
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The antimalarial natural product symplostatin 4 is a nanomolar inhibitor of the food vacuole falcipainsIn: Chemistry and Biology Vol. 19 (2012) Nr. 12, pp. 1546 - 1555ISSN: 1074-5521Online Full Text: dx.doi.org/
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The impact of plant-pathogen studies on medicinal drug discoveryIn: Chemical Society Reviews Vol. 41 (2012) Nr. 8, pp. 3168 - 3178ISSN: 1460-4744; 0306-0012Online Full Text: dx.doi.org/
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Enzymatic timing and tailoring of macrolactamization in syringolin biosynthesisIn: Organic Letters Vol. 13 (2011) Nr. 17, pp. 4518 - 4521ISSN: 1523-7052; 1523-7060Online Full Text: dx.doi.org/
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HTRA proteases : regulated proteolysis in protein quality controlIn: Nature Reviews Molecular Cell Biology Vol. 12 (2011) Nr. 3, pp. 152 - 162ISSN: 1471-0072Online Full Text: dx.doi.org/
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Macrocyclic Proteasome InhibitorsIn: Current Medicinal Chemistry Vol. 18 (2011) Nr. 33, pp. 5052 - 5060ISSN: 0929-8673; 1875-533XOnline Full Text: dx.doi.org/
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Mining the active proteome of Arabidopsis ThalianaIn: Frontiers in Plant Science (FPLS) Vol. 2 (2011)ISSN: 1664-462XOnline Full Text: dx.doi.org/ (Open Access)
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Proteasome activity imaging and profiling characterizes bacterial effector Syringolin AIn: Plant Physiology Vol. 155 (2011) Nr. 1, pp. 477 - 489ISSN: 0032-0889; 1532-2548Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Protein quality control in the bacterial periplasmIn: Annual Review of Microbiology Vol. 65 (2011) pp. 149 - 168ISSN: 1545-3251; 0066-4227Online Full Text: dx.doi.org/
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Substrate induced remodeling of the active site regulates human HtrA1 activityIn: Nature Structural & Molecular Biology Vol. 18 (2011) pp. 386 - 388ISSN: 1545-9993Online Full Text: dx.doi.org/
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Synthesis of the B-seco limonoid scaffoldIn: Chemical Communications: ChemComm Vol. 47 (2011) Nr. 23, pp. 6545 - 6547ISSN: 1364-548X; 0009-241X; 0022-4936; 1359-7345Online Full Text: dx.doi.org/
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The chemistry and biology of syringolins, glidobactins and cepafungins (syrbactins)In: Natural Product Reports Vol. 28 (2011) Nr. 11, pp. 1854 - 1867ISSN: 0265-0568; 1460-4752Online Full Text: dx.doi.org/
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The natural product hybrid of Syringolin A and Glidobactin A synergizes proteasome inhibition potency with subsite selectivity.In: Chemical Communications: ChemComm Vol. 47 (2011) Nr. 1, pp. 385 - 387ISSN: 1364-548X; 0009-241X; 0022-4936; 1359-7345Online Full Text: dx.doi.org/
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The yeast three-hybrid system as an experimental platform to identify proteins interacting with small signaling molecules in plant cells : Potential and limitationsIn: Frontiers in Plant Science (FPLS) Vol. 2 (2011) Nr. DEC,ISSN: 1664-462XOnline Full Text: dx.doi.org/ (Open Access)
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A Scaffold-Tree-Merging Strategy for Prospective Bioactivity Annotation of γ-PyronesIn: Angewandte Chemie International Edition Vol. 49 (2010) Nr. 21, pp. 3666 - 3670ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/
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Activation Instead of Inhibition : Targeting Proenzymes for Small-Molecule InterventionIn: ChemBioChem Vol. 11 (2010) Nr. 5, pp. 637 - 639ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/ Online Full Text
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Convergent synthesis and biological evaluation of syringolin a and derivatives as eukaryotic 20S proteasome inhibitorsIn: European Journal of Organic Chemistry (2010) Nr. 21, pp. 3991 - 4003ISSN: 1099-0690; 0075-4617; 0170-2041; 0365-5490; 0947-3440; 1434-193X; 1434-243XOnline Full Text: dx.doi.org/
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Conversion of a regulatory into a degradative proteaseIn: Journal of Molecular Biology (JMB) Vol. 397 (2010) Nr. 4, pp. 957 - 966ISSN: 1089-8638; 0022-2836Online Full Text: dx.doi.org/
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Determinants of structural and functional plasticity of a widely conserved protease chaperone complexIn: Nature Structural & Molecular Biology Vol. 17 (2010) Nr. 7, pp. 837 - 843ISSN: 1545-9993; 1545-9985Online Full Text: dx.doi.org/
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Impaired Binding of 14-3-3 to C-RAF in Noonan Syndrome Suggests New Approaches in Diseases with Increased Ras SignalingIn: Molecular and Cellular Biology Vol. 30 (2010) Nr. 19, pp. 4698 - 4711ISSN: 0270-7306Online Full Text: dx.doi.org/ Online Full Text
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LAP6/POLYKETIDE SYNTHASE A and LAP5/POLYKETIDE SYNTHASE B encode hydroxyalkyl α-pyrone synthases required for pollen development and sporopollenin biosynthesis in Arabidopsis thalianaIn: The Plant Cell Vol. 22 (2010) Nr. 12, pp. 4045 - 4066ISSN: 1040-4651Online Full Text: dx.doi.org/ (Open Access)
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N-Acylation during glidobactin biosynthesis by the tridomain nonribosomal peptide synthetase module GlbFIn: Chemistry and Biology Vol. 17 (2010) Nr. 10, pp. 1077 - 1083ISSN: 1879-1301; 1074-5521Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Principles, implementation, and application of biology-oriented synthesis (BIOS).In: Biological Chemistry Vol. 391 (2010) Nr. 5, pp. 491 - 497ISSN: 1431-6730; 1432-0355
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Solid phase total synthesis of the 3-amino-6-hydroxy-2-piperidone (Ahp) cyclodepsipeptide and protease inhibitor Symplocamide A.In: Chemical Communications: ChemComm (2010) Nr. 46, pp. 8857 - 8859ISSN: 1364-548X; 0009-241X; 0022-4936; 1359-7345Online Full Text: dx.doi.org/
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Syrbactin class proteasome inhibitor-induced apoptosis and autophagy occurs in association with p53 accumulation and Akt/PKB activation in neuroblastomaIn: Biochemical Pharmacology Vol. 80 (2010) Nr. 2, pp. 170 - 178ISSN: 0006-2952Online Full Text: dx.doi.org/
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The first small-molecule inhibitor of 14-3-3s : Modulating the master regulatorIn: ChemBioChem Vol. 11 (2010) Nr. 15, pp. 2085 - 2087ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/
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Biology-Oriented Combined Solid- and Solution-Phase Synthesis of a Macroline-Like Compound CollectionIn: Chemistry - A European Journal Vol. 15 (2009) Nr. 44, pp. 11976 - 11984ISSN: 0947-6539; 1521-3765Online Full Text: dx.doi.org/
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Minitags for small molecules: detecting targets of reactive small molecules in living plant tissues using ‘click chemistry’.In: The Plant Journal Vol. 57 (2009) Nr. 2, pp. 373 - 385ISSN: 1365-313X
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Peptidic small molecule activators of the stress sensor DegSIn: Molecular BioSystems Vol. 5 (2009) Nr. 9, pp. 980 - 985ISSN: 1742-206X; 1742-2051Online Full Text: dx.doi.org/
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Purification, crystallization and preliminary X-ray diffraction analysis of a plant subtilase.In: Acta crystallographica, Section F, Structural biology and crystallization communications online Vol. 65 (2009) Nr. 5, pp. 522 - 525
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Selectivity profiling of DegP substrates and inhibitorsIn: Bioorganic and Medicinal Chemistry Vol. 17 (2009) Nr. 7, pp. 2920 - 2924ISSN: 0968-0896; 1464-3391Online Full Text: dx.doi.org/
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Structural basis for Ca2+-independence and activation by homodimerization of tomato subtilase 3In: Proceedings of the National Academy of Sciences of the United States of America (PNAS) Vol. 106 (2009) Nr. 40, pp. 17223 - 17228ISSN: 1091-6490; 0027-8424Online Full Text: dx.doi.org/
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Structure, function and regulation of the conserved serine proteases DegP and DegS of Escherichia coliIn: Research in Microbiology Vol. 160 (2009) Nr. 9, pp. 660 - 666ISSN: 0923-2508; 1769-7123Online Full Text: dx.doi.org/
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Synthetic and structural studies on Syringolin A and B reveal critical determinants for selectivity and potency of proteasome inhibitionIn: Proceedings of the National Academy of Sciences of the United States of America (PNAS) Vol. 106 (2009) Nr. 16, pp. 6507 - 6512ISSN: 1091-6490; 0027-8424
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Syringolin A selectively labels the 20S proteasome in murine EL4 and wildtype and bortezomib adapted leukemic cell linesIn: ChemBioChem Vol. 10 (2009) Nr. 16, pp. 2638 - 2643ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/ Online Full Text
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The ras pathway modulator melophlin a targets dynaminsIn: Angewandte Chemie International Edition Vol. 48 (2009) Nr. 39, pp. 7240 - 7245ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/; Online Full Text: dx.doi.org/
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Traceless solid phase synthesis of natural product inspired cis-1,2-dehydrodecalinsIn: Chemical Communications: ChemComm (2009) Nr. 20, pp. 2923 - 2925ISSN: 1364-548X; 0009-241X; 0022-4936; 1359-7345Online Full Text: dx.doi.org/
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γ-Pyrone natural products – a privileged compound class provided by nature.In: Bioorganic & medicinal chemistry : a Tetrahedron publication for the rapid dissemination of full original research papers and critical reviews on biomolecular chemistry, medicinal chemistry and related disciplines Vol. 17 (2009) Nr. 6, pp. 2304 - 2309ISSN: 0968-0896
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A plant pathogen virulence factor inhibits the eukaryotic proteasome by a novel mechanismIn: Nature Vol. 452 (2008) pp. 755 - 758ISSN: 0028-0836; 1476-4687
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Allosteric activation of HtrA protease DegP by stress signals during bacterial protein quality controlIn: Angewandte Chemie International Edition Vol. 47 (2008) Nr. 7, pp. 1332 - 1334ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/
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Allosteric regulation of proteasesIn: ChemBioChem Vol. 9 (2008) Nr. 18, pp. 2920 - 2928ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/ Online Full Text
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Biology-inspired synthesis of compound librariesIn: Cellular and Molecular Life Sciences - CMLS Vol. 65 (2008) Nr. 7/8, pp. 1186 - 1201ISSN: 1420-682X; 1420-9071
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Discovery of a New Class of Inhibitors of Mycobacterium tuberculosis Protein Tyrosine Phosphatase B by Biology-Oriented SynthesisIn: Angewandte Chemie International Edition Vol. 47 (2008) Nr. 32, pp. 5973 - 5977ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/
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Identification and characterization of a novel proteasome inhibitor with apoptotic properties in neuroblastoma.In: Proceedings : annual meeting of the American Association for Cancer Research. Vol. 49 (2008) pp. 773ISSN: 0569-2261
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Identification of CNG trinucleotide repeat ligands with a FRET melting assayIn: ChemBioChem Vol. 9 (2008) Nr. 8, pp. 1229 - 1234ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/ Online Full Text
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On the molecular mechanism of hormone action: Hunting the jasmonate target(s)In: Current topics in phytochemistry Vol. 9 (2008) pp. 1 - 16ISSN: 0972-4796
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β-lactone probes identify a papain-like peptide ligase in Arabidopsis thaliana.In: Nature chemical biology Vol. 4 (2008) Nr. 9, pp. 557 - 563ISSN: 1552-4450
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Fluorescence-based melting assays for studying quadruplex ligandsIn: Methods: A Companion to Methods in Enzymology Vol. 42 (2007) Nr. 2, pp. 183 - 195ISSN: 1046-2023; 1095-9130Online Full Text: dx.doi.org/
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Identification of inhibitors for mycobacterial protein tyrosine phosphatase B (MptpB) by biology-oriented synthesis (BIOS).In: Chemistry: An Asian Journal Vol. 2 (2007) Nr. 9, pp. 1109 - 1126ISSN: 1861-4728; 1861-471X
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Aminoglycoside-quinacridine conjugates : Towards recognition of the P6.1 element of Telomerase RNA.In: ChemBioChem Vol. 7 (2006) Nr. 2, pp. 321 - 329ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/ Online Full Text
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Neomycin-capped aromatic platforms : Quadruplex DNA recognition and telomerase inhibitionIn: Organic and Biomolecular Chemistry Vol. 4 (2006) Nr. 6, pp. 1049 - 1057ISSN: 1477-0539; 1477-0520Online Full Text: dx.doi.org/
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TMC-95-Based Inhibitor Design Provides Evidence for the Catalytic Versatility of the ProteasomeIn: Chemistry and Biology Vol. 13 (2006) Nr. 6, pp. 607 - 614ISSN: 1879-1301; 1074-5521
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Toward Semisynthetic Lipoproteins by Convergent Strategies Based on Click and Ligation ChemistryIn: ChemBioChem Vol. 6 (2005) Nr. 4, pp. 625 - 628ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/ Online Full Text
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Binding mode of TMC-95A analogues to eukaryotic 20S proteasomeIn: ChemBioChem Vol. 5 (2004) Nr. 9, pp. 1256 - 1266ISSN: 1439-4227; 1439-7633Online Full Text: dx.doi.org/
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TMC-95A analogues with endocyclic biphenyl ether group as proteasome inhibitors.In: Chemistry & biodiversity : CB ; an official journal of the Center for the Study of Biological Complexity Vol. 1 (2004) Nr. 1, pp. 161 - 173ISSN: 1612-1872
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Synthesis of a TMC-95A ketomethylene analogue by cyclization via intramolecular Suzuki coupling.In: Organic Letters Vol. 5 (2003) Nr. 19, pp. 3435 - 3437ISSN: 1523-7052; 1523-7060
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Navigation inside a protease: Substrate selection and product exit in the tricorn protease from Thermoplasma acidophilumIn: Journal of Molecular Biology (JMB) Vol. 324 (2002) Nr. 5, pp. 1041 - 1050ISSN: 1089-8638; 0022-2836Online Full Text: dx.doi.org/
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Structural plasticity and non-covalent substrate binding in the GroEL apical domain: A study using electrospray ionisation mass spectrometry and fluorescence binding studiesIn: The Journal of Biological Chemistry (JBC) Vol. 277 (2002) Nr. 36, pp. 33115 - 33126ISSN: 0021-9258; 1083-351X
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Structure-based prediction of cyclization propensities of linear precursorsIn: International Journal of Peptide Research and Therapeutics Vol. 9 (2002) Nr. 2/3, pp. 65 - 70ISSN: 1573-3149
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Synthesis of TMC-95A analogues. Structure-based prediction of cyclization propensities of linear precursorsIn: Letters in Peptide Science Vol. 9 (2002) Nr. 2-3, pp. 65 - 70ISSN: 0929-5666; 1573-496XOnline Full Text: dx.doi.org/
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The Core Structure of TMC-95A Is a Promising Lead for Reversible Proteasome InhibitionIn: Angewandte Chemie International Edition Vol. 41 (2002) Nr. 5, pp. 780 - 783ISSN: 1521-3773; 1433-7851; 0570-0833Online Full Text: dx.doi.org/
Journal articles
Patents
Groll M, Kaiser M, Huber R, Moroder L, Renner C, Kohno J. Crystals of a Proteasome-Inhibitor Complex. Patent WO02081501 (2002).
Kaiser M, Clerc J. Development of a synthesis of Syringolin A and B and derivatives thereof. Patent US 61/129,865 (2008).
Kaiser M, Clerc J. Derivatives of syringolin A. Patent EP09075018.3-2117 (2009).
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