B02
Project Area B - Chemical Biology
Dr. Malte Gersch
Department of Chemistry and Chemical Biology
Technische Universität Dortmund
Phone: +49 231 133 2943
Email
Chemical tools to dissect roles of deubiquitinases in cell state transitions
The Ubiquitin system controls the activities and amounts of a plethora of proteins within eukaryotic cells, and thereby regulates critical cell state transitions including those during the cell cycle, DNA damage repair, mitophagy and inflammation. The post-translational modification of substrate proteins with the small protein Ubiquitin is catalysed by E1, E2 and E3 enzymes. Their activity is counteracted by about 100 dedicated isopeptidases, termed deubiquitinases (DUBs). DUBs thus play important roles in determining the strength of Ubiquitin-dependent signalling processes, and as such their activity is tightly regulated. In addition to their catalytic activities, non-catalytic activities have been reported for several DUBs. However, the underlying molecular mechanisms and roles which DUBs play in many biological pathways are still poorly understood. This project will expand the available small molecule toolbox for DUBs which will allow to dissect their multifaceted roles in Ubiquitination-controlled cell state transitions in close collaboration with other projects within this CRC.
Project Members
Nikolas Klink
Jan André Hane
Publications
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Chimeric deubiquitinase engineering reveals structural basis for specific inhibition of the mitophagy regulator USP30In: Nature Structural & Molecular Biology, Vol. 32, 2025, Nr. 9, pp. 1776 – 1786DOI (Open Access)
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Discovery and mechanism of K63-linkage-directed deubiquitinase activity in USP53In: Nature Chemical Biology, Vol. 21, 2025, Nr. 5, pp. 746 – 757DOI (Open Access)
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Light-Activatable Ubiquitin for Studying Linkage-Specific Ubiquitin Chain Formation KineticsIn: Advanced Science, Vol. 12, 2025, Nr. 6, 2406570DOI (Open Access)
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Small Molecule-Induced Alterations of Protein Polyubiquitination Revealed by Mass-Spectrometric Ubiquitome AnalysisIn: Angewandte Chemie International Edition, Vol. 64, 2025, Nr. 32, e202508916DOI (Open Access)
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N-Cyanopiperazines as Specific Covalent Inhibitors of the Deubiquitinating Enzyme UCHL1In: Angewandte Chemie International Edition, Vol. 63, 2024, Nr. 12, e202318849DOI (Open Access)
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Molecular basis for ubiquitin/Fubi cross-reactivity in USP16 and USP36In: Nature Chemical Biology, Vol. 19, 2023, Nr. 11, pp. 1394 – 1405DOI (Open Access)
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Native Semisynthesis of Isopeptide-Linked Substrates for Specificity Analysis of Deubiquitinases and Ubl ProteasesIn: Journal of the American Chemical Society: JACS, Vol. 145, 2023, Nr. 38, pp. 20801 – 20812DOI (Open Access)
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Structural basis for specific inhibition of the deubiquitinase UCHL1In: Nature Communications, Vol. 13, 2022, Nr. 1, 5950DOI (Open Access)
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Targeted degradation of USP7 in solid cancer cells reveals disparate effects of deubiquitinase inhibition vs. acute protein depletion2025DOI, Online Full Text (Open Access)